Pairwise Alignments

Query, 411 a.a., RNA-2',3'-PO4:RNA-5'-OH ligase from Variovorax sp. SCN45

Subject, 465 a.a., RNA-splicing ligase RtcB from Escherichia coli ECOR38

 Score =  133 bits (335), Expect = 1e-35
 Identities = 122/417 (29%), Positives = 186/417 (44%), Gaps = 60/417 (14%)

Query: 27  VPVEPEAQKQLENAARLPI-----VFKHIAAMPDVHYGIGATVGSVIP-TFKAIIPAAVG 80
           +P+E +   QL + A + I       +   A PD H G G  VG+V+  T   +IPAA+G
Sbjct: 43  LPLEEKVVTQLLDFAEVKIPDHPGYVRQTCATPDFHPGNGVPVGAVVASTPDLVIPAAIG 102

Query: 81  VDIGCGMMACKTTLHANDLPDNLGPLRSAI-------EKAVPHGSNPKRMGRDKGSWETP 133
            DI CGM    T L       N   +   +       E+ VP  +       D G  +  
Sbjct: 103 TDISCGMRLLTTGLTLEQAEANKEIITQRLTQVLLQNERDVPLSARAFTALFDGGPADCM 162

Query: 134 PNETDVAWAALKDEFDAICEDYPRLKNTNNHKH---------------------LGTLGT 172
            +    A    +     + ++  R    N H                       LGT G+
Sbjct: 163 -SALPSAGLWTRTNIPRMTQEIDRCIGLNEHNSHSRYAPPALLVTDRPLLRDPCLGTPGS 221

Query: 173 GNHFIEVCLDEA--------------GSVWFMLHSGSRGVGNAVGTHFIELAKKDAELHQ 218
           GNHFIE+ + ++              G +  M+HSGSR VG  VG  +++ A+ +     
Sbjct: 222 GNHFIELQVVDSVVDRHVAWQQGLKTGDIVVMIHSGSRDVGFYVGRRWMDRARAEWPTGH 281

Query: 219 RNLPDQDLAYFEEGARYFGDYVRAVGWAQKFARANREVMMQRVVAAVRKVIVKPFEAHVE 278
           ++ P   L     G     +Y++A+G A ++A  NR  + + V   +  +  +   +H+ 
Sbjct: 282 KH-PQSGLYGLAGGLAE--EYLQAMGMAARYAWLNRVTIAEMVRVCLANLFHQD-NSHL- 336

Query: 279 AVNCHHNYVSRETHFGEDVLVTRKGAVSAKAGELGIIPGSMGAKSFIVRGKGNPESFMSC 338
            V+  HN + RE     ++ + RKGA  A+AG L +IPGSMG  S++  G GNPE   SC
Sbjct: 337 VVDVPHNIILRE----HEMNIHRKGATPARAGNLALIPGSMGDYSWLAVGCGNPEWLWSC 392

Query: 339 SHGAGRKMSRTKAKKLFTIADQIAATEGVECRKDADVIDEIPMAYKDIDAVMEAQQD 395
           SHGAGR   R +A       +     + V  R++   I+E P AYKDI  V+EAQQ+
Sbjct: 393 SHGAGRS-QRRQAMHSRATEESTLPWQCVTLREERR-IEEAPAAYKDIGPVIEAQQE 447