Pairwise Alignments

Query, 540 a.a., Transcriptional regulatory protein RtcR from Variovorax sp. SCN45

Subject, 532 a.a., DNA-binding transcriptional regulator RtcR from Escherichia coli ECRC62

 Score =  632 bits (1631), Expect = 0.0
 Identities = 332/536 (61%), Positives = 408/536 (76%), Gaps = 13/536 (2%)

Query: 1   MKPIVVIGFLGTQLD-AGQGAGRWNKWRPTVSLAQHEDMVVSRMELLYTLKHKALAELVK 59
           M+  V  GF+GT LD AG+G+ RW+KWRPT+ L Q E +V+ R+ELL+  + ++L E +K
Sbjct: 1   MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDTRSRSLFETLK 60

Query: 60  ADIATVSPETTVNLVPMELADPWDFGEVYSRLYDWARGYSFDTEREQYWTHITTGTHVAQ 119
            DIA+VSPET V  V +EL +PWDF EVY+ L+D+ARGY F  E+E Y  HITTGTHVAQ
Sbjct: 61  RDIASVSPETEVVGVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ 120

Query: 120 ICMFLLSESRVVPGVLAQTSPPRRQRQGE-AGKCTLIDLDLSRYDVIARRFDAEQRDAVA 178
           IC FLL+E+R +P  L Q+SPPR++ Q   AG+ T+IDLDLSRY+ IA RF  E++  + 
Sbjct: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRGAGEVTIIDLDLSRYNAIASRFAEERQQTLD 180

Query: 179 FLKSGIATRNARFNALIDEIERVAVRSRAPILLVGPTGAGKSFLARRMFELKQSRHQMTG 238
           FLKSGIATRN  FN +I++IE+VA++SRAPILL GPTGAGKSFLARR+FELKQ+RHQ +G
Sbjct: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG 240

Query: 239 PFVEVNCATLRGDGAASTLFGHRKGSFTGAAADRAGLLRTAHQGALFLDEIGELGLDEQA 298
            FVEVNCATLRGD A STLFGH KG+FTGA   R GLLR+A+ G LFLDEIGELG DEQA
Sbjct: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300

Query: 299 MLLKAIEEKRFFPVGADKEVESDFQLIAGTNRDLRSDVADGRFREDLFARINLWTYDLPG 358
           MLLKAIEEK F+P G+D++V SDFQLIAGT RDLR  VA+G+FREDL+ARINLWT+ LPG
Sbjct: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360

Query: 359 LAQRPEDIEPNVDHLLAIHAAENHRVVRFNAEARAAYLRFAQSGEAVWSGNFRDLSASVT 418
           L QR EDIEPN+D+ +  HA      VRFN EAR A+L FA S +A W GNFR+LSASVT
Sbjct: 361 LRQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420

Query: 419 RLATLADGGRIPVALVEAEIARLRWLWKHAGAVSPASAGGGDVDLDALLGEERVQALDLF 478
           R+AT A  GRI + +VE EI RLR+ W+ +    P++       L ALLG E  + +DLF
Sbjct: 421 RMATFATSGRITLDVVEDEINRLRYNWQES---RPSA-------LTALLGAE-AENIDLF 469

Query: 479 DRLQLEAVVRVCRQSRSLSDAGRQLFQASRTQRSVVNDADRLRKYLVKLGLDWGQV 534
           DRLQLE V+ +CRQ++SLS AGR LF  SR  ++ VNDADRLRKYL + GL W  V
Sbjct: 470 DRLQLEHVIALCRQAKSLSAAGRLLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525