Pairwise Alignments

Query, 497 a.a., Transcription termination protein NusA from Variovorax sp. SCN45

Subject, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

 Score =  499 bits (1284), Expect = e-145
 Identities = 258/494 (52%), Positives = 355/494 (71%), Gaps = 3/494 (0%)

Query: 1   MNREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFR 60
           M++E+L++V+++S EK V   V+F A+E ALA ATKK  + +VD+RV ++R +G YETFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFR 60

Query: 61  RWHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVESVPIGRIGAMAAKQVILQK 120
           RW VV DEA L  P  E  L + K+   + +VG+ IEE +ES+  GRI A  AKQVI+QK
Sbjct: 61  RWTVV-DEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQK 119

Query: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGR-VEGRLRRSEMIAKENLRNGD 179
           +R+AER  +++ +  R  +I  GTVK++ + ++IV+ G   E  L R ++I +E  R G 
Sbjct: 120 VREAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGV 179

Query: 180 RVRAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIA 239
           R+RA++ E+    RG  +ILSR+AP+ +IELFR EVPEI +GL+E+ + +RDPGSRAKIA
Sbjct: 180 RLRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIA 239

Query: 240 VLSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIV 299
           V S DKR+DP G C+G+RG+RV AV+ EL GERVDIVLW ++PAQFVI A++PA V++I+
Sbjct: 240 VRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAII 299

Query: 300 VDEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRK 359
           VDE+ HAMD+ V E+NLA AIGRGGQNVRLAS LTGW +N+M   +   KQ  ET    +
Sbjct: 300 VDEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILR 359

Query: 360 LFMEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTM 419
            F+E+L+VDEE+A +L+ EGF SLEE+AYVP+ EML I+ FDED +NELR+RAKD LLT 
Sbjct: 360 NFIEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTK 419

Query: 420 EIAKEEGVEGAPQVSQDLHDLEGLDPELIPKLVEAGVNTRDDLADLAVDELTEITGHSAD 479
            IA EE +  A   ++DL  LEG+D +L  +L   GV  R+DLA+ ++D+L +I G   +
Sbjct: 420 AIATEEKLADA-HPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLDIDGIDEE 478

Query: 480 DAKALILKAREHWF 493
            A  LI+ AR HWF
Sbjct: 479 RAGKLIMAARAHWF 492