Pairwise Alignments

Query, 497 a.a., Transcription termination protein NusA from Variovorax sp. SCN45

Subject, 495 a.a., transcription termination/antitermination L factor from Escherichia coli BL21

 Score =  479 bits (1232), Expect = e-139
 Identities = 247/498 (49%), Positives = 353/498 (70%), Gaps = 5/498 (1%)

Query: 1   MNREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFR 60
           MN+E+L +V+A+S EK + R+ +F A+ESALA ATKK ++ ++D+RV +DR SGD++TFR
Sbjct: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60

Query: 61  RWHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVESVPIGRIGAMAAKQVILQK 120
           RW VV +   +  P +EI L  A+ E   + +G+Y+E+ +ESV   RI    AKQVI+QK
Sbjct: 61  RWLVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117

Query: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGR-VEGRLRRSEMIAKENLRNGD 179
           +R+AER M+++ F     +I  G VK++++ +I ++ G   E  + R +M+ +EN R GD
Sbjct: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177

Query: 180 RVRAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIA 239
           RVR ++  V    RGA + ++RS PE +IELFR EVPEI + ++EIK+ ARDPGSRAKIA
Sbjct: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237

Query: 240 VLSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIV 299
           V ++DKR+DP+G CVG+RG RV AV+ EL GER+DIVLW ++PAQFVI A+APA+V+SIV
Sbjct: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297

Query: 300 VDEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRK 359
           VDE+KH MD+ V+  NLA AIGR GQNVRLAS L+GW++N+M  ++   K   E  A+  
Sbjct: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357

Query: 360 LFMEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTM 419
            F + LD+DE+ A +L+ EGF++LEE+AYVP+ E+LEIE  DE T+  LR RAK+AL T+
Sbjct: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417

Query: 420 EIAKEEGVEGAPQVSQDLHDLEGLDPELIPKLVEAGVNTRDDLADLAVDELTEITGHSAD 479
             A+EE + G  + + DL +LEG+D +L  KL   GV T +DLA+  +D+L +I G + +
Sbjct: 418 AQAQEESL-GDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDE 476

Query: 480 DAKALILKAREHWFAGQE 497
            A ALI+ AR   + G E
Sbjct: 477 KAGALIMAARNICWFGDE 494