Pairwise Alignments

Query, 288 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  117 bits (292), Expect = 4e-31
 Identities = 79/290 (27%), Positives = 146/290 (50%), Gaps = 9/290 (3%)

Query: 2   LETLVQGVLLGGLYTLFALGQSLMFGVMRLTNTAQGDFIILGAFAVIAGVSLT---GDAV 58
           L+ LV G+ LG +Y L A+G ++++G++ + N A G+  ++ A+     ++L    G   
Sbjct: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVES 65

Query: 59  APWLVA---LAVLPVAFGFGYALQRYVLNGTLGKDPLPSLVVTFGLSIVIQNLLLELFSA 115
            P L+    L  + V   +G+ ++R           L  L+   G+S+++QN       A
Sbjct: 66  FPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQGA 125

Query: 116 DPRAIETGGLSTQGVALGSA-MSVGVLPLVVLAIALLATGALQWLFARTALGRSFRAVSD 174
             + + T       V +GS  + +    + +L  A +  G L ++   T LGR  RA   
Sbjct: 126 RQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRATQQ 185

Query: 175 DREIAELMGLNAKKVYAFATAIAFVLIAIAGALQGMR-TTVSPSDGPLLLLFAFEAVIIG 233
           DR++A ++G+N  +V ++   I  V+ A+AG L  M   T     G ++ + AF A ++G
Sbjct: 186 DRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAVLG 245

Query: 234 GMGSFWGTLAGAMILGITQQI-GFRLDPGWGIWFGHIVFLVVLVLRPQGL 282
           G+GS  G + G +ILGI++ +    ++  +   F   + +++L+ RPQGL
Sbjct: 246 GIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGL 295