Pairwise Alignments

Query, 463 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Variovorax sp. SCN45

Subject, 690 a.a., Predicted secretion system X protein GspD-like from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 94.4 bits (233), Expect = 1e-23
 Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 31/308 (10%)

Query: 151 VARDTALASNGEKADLIDR--SVVNVRSNTVQVEVKVVEFNRSVLKQAGLNIFSTRPNSS 208
           + +DTA     E   L +R  S +++    V ++V+V+E  RS L++ GL      P+  
Sbjct: 308 IIKDTA-----EAVRLAERLLSSLDMAEPEVMLDVEVLEVTRSRLQELGLRF----PDQI 358

Query: 209 GFSFGVFSPSSLISSTFAANG--QIAVQYNNPLTQAFDLLFNFS-------KAGIGLNFG 259
           G+  G   P+  I++T   NG  Q        L + +  L N S          I LN  
Sbjct: 359 GY--GRLQPN--IATTIVNNGVTQSNTTLGGQLAEGYVDLRNRSGLTSFVANPAITLNLR 414

Query: 260 FLEGNGMARVLAEPTLVALSGQSASFLAGGELPIPVPQGLGTI----SIEYKPFGIGLTL 315
              G+G    LA P +   + + A    G +LP+        +    S+ Y   G+ L +
Sbjct: 415 SEAGDG--NTLANPRIRVKNREKAKIHIGDKLPVFTTTSTANVGVSSSVSYLDVGLKLDV 472

Query: 316 TPTVLSNERIVLKVAPEASDLDYTNAITLNGVVVPAITTRRADTTVELGDGESFIIGGLV 375
            P V  ++ + +KV  E S +        N +    I TR A T + L DGE+ ++ GL+
Sbjct: 473 EPNVYLDDEVGIKVQLEVSSVIREVTGPSNSLAYQ-IGTRSAGTVLRLRDGETQVLAGLI 531

Query: 376 SRTTTSNASKVPMLGDLPIIGTFFSKNNYQMNEKELVILVTPHLVKPIARGTDLAPYLPG 435
           +    S+A+++P LGD+P IG  FS      ++ E+V+L+TP +V+ +AR    A   P 
Sbjct: 532 NDEERSSANRLPGLGDIPAIGRLFSSTRDNNSKTEIVLLITPRIVRNVARPDSNAFNEPA 591

Query: 436 SAEQRDGA 443
            +E   GA
Sbjct: 592 GSEASVGA 599