Pairwise Alignments

Query, 463 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Variovorax sp. SCN45

Subject, 641 a.a., type II secretion system protein D from Enterobacter asburiae PDN3

 Score = 87.0 bits (214), Expect = 2e-21
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 16/277 (5%)

Query: 148 AHQVARDTALASNGEKADLIDRSVVNVRSNTVQVEVKVVEFNRSVLKQAGLNIFSTRPNS 207
           A  +A D  ++++     L+  +  NV ++  +V  K+      VL +A   I +   + 
Sbjct: 300 AAPIAGDLNISADESTNSLVITAQPNVMNSLEKVIDKLDIRRPQVLVEA---IIAEVQDG 356

Query: 208 SGFSFGVFSPSSLISSTFAANGQ--IAVQYNNPLTQAFDLLFNFSKAGIGLNFGFLEGNG 265
           +G   GV   S      F + G     ++ +  +     L   F     G     L  NG
Sbjct: 357 NGLDLGVQWTSKHGGVQFGSTGLPISQIKKSKVIGSYTGLATGFFNGDFGALMTALSTNG 416

Query: 266 MARVLAEPTLVALSGQSASFLAGGELPIPVPQGLGTIS-------IEYKPFGIGLTLTPT 318
              +L+ P++V L  + ASF  G +  +PV  G  T S       +E K  G  L + P 
Sbjct: 417 KNDILSTPSVVTLDNKEASFNVGQD--VPVLSGSQTTSGDNVFNSVERKTVGTKLKIVPQ 474

Query: 319 VLSNERIVLKVAPEASDLDYTNAITLNGVVVPAITTRRADTTVELGDGESFIIGGLVSRT 378
           +   + I LK+  E S +D T+  T +  + P   TR  +  V +  G++ ++GGL+   
Sbjct: 475 INDGDMIHLKIEQEVSSVDNTS--TADASLGPTFNTRTINNEVMVHSGQTVVLGGLMENV 532

Query: 379 TTSNASKVPMLGDLPIIGTFFSKNNYQMNEKELVILV 415
           T  + SKVP+LGD+P++G  F   +    ++ L++ +
Sbjct: 533 TKQSVSKVPLLGDIPVVGQLFRYTSQDSAKRNLMVFI 569