Pairwise Alignments

Query, 645 a.a., Outer membrane component of TAM transport system from Variovorax sp. SCN45

Subject, 788 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 113/560 (20%), Positives = 189/560 (33%), Gaps = 90/560 (16%)

Query: 149 IVITVSPGELTKVSNVQISYGGPIADDATAEAQRDSIRTAWALRAGQPFTQQAWDEAKTT 208
           I + +  G+   V +V++S           +  +D ++    ++ GQ F+++        
Sbjct: 256 ITVNIQEGQKYTVRDVKLS--------GELKVPQDQVQALLLVKKGQVFSRKLMTTTSDL 307

Query: 209 ALRSLTAKRFPTGNIEISRAEVDADRHEARLSVTYQSGPAYKFGPLVLRGIQRYDPDGAR 268
             R L    +   N+  +    +AD H   ++ + + G       +  RG  + D    R
Sbjct: 308 ITRRLGNDGYTFANVSGTPQVHEAD-HTVDITFSVEPGKRAYVNRINFRGNTKTDDKVLR 366

Query: 269 RIARLPSGQDYDQQKLLDAQQRLASSGYYDSVFLTLDTESGNPLAAPVIAQLREAPLQKV 328
           R  R   G       +  ++ RL   GY+  V +     +G      V   ++E     +
Sbjct: 367 REMRQMEGGWASTYLIDQSKVRLERLGYFKEVNVETPAVTGLDDQLDVNYAVQEQASGSI 426

Query: 329 VLGAGFTTDNGPRLSVDHIHNQVPLLGWRAVSRLS----------------VDRDIKSLS 372
               GF   +G  L      N     G  A   L+                  RD  SL 
Sbjct: 427 TASVGFAQSSGLILGGSITQNNFLGTGNSASLGLTRSSYQSKYNIGFTDPYFTRDGVSLG 486

Query: 373 -------TELNAIPDDHGWRWFSGAELKSEQSGSYVVDSGRLRGGRNKSSDHIDRSYFLQ 425
                  T+ N   DD    +   +       G  + ++ RL  G     D I+   +  
Sbjct: 487 YNAFYNKTDYNKYYDDGVSYYAINSYGLGASLGYPINETSRLSFGLTAQHDSIEPGTYSA 546

Query: 426 ---YDYAQNRGTNAPPSASAVTANWGWTGRYFDNNSAPSRGFGIALEVAAGYTLTGMQTP 482
              YD+ +  G       +   AN GW+    +     +RG    L +    T+ G    
Sbjct: 547 DEIYDFIEREGKQF----TNFKANLGWSESTLNKGVLATRGHAQNLNLTV--TVPGSDLS 600

Query: 483 FTRTYARWLGVLPLGSSDDKETNARRSRLQLRLE-GGAVAAKDSAQIPSTLMFLTGGDTT 541
           F +        LP+       +N    RL  +L  G    + D   +P    +  GG+ T
Sbjct: 601 FYKIDYTGQTFLPV-------SNNTALRLHTKLGYGNGYGSTDG--LPFYESYTAGGEGT 651

Query: 542 VRGYSYKQIGTVRPDGTTVAGRY--------------------LGVASVEWQRPVVYNNK 581
           VRG+   + GT+ P  T   G Y                    L     E+  PV +   
Sbjct: 652 VRGF---ESGTLGPRSTPATGTYASAGQAYYSDRDTEALGGNILITGGAEYLFPVPFIKD 708

Query: 582 LTDWESVVFVDAGAVADKPAELKPKVG------------VGVGARWRSPVGPVQADLAYG 629
                + +F D G+V      L    G            VGVG  W SP+GP+  +LAY 
Sbjct: 709 NKSVRTSLFWDVGSVYSDKCYLSTTQGCGGVDLSQMASSVGVGVTWYSPLGPLSVNLAYP 768

Query: 630 V----DSKRFRLHFRLGFTF 645
           +    ++ +    F +G TF
Sbjct: 769 IRTPENADKQVFQFSMGQTF 788



 Score = 29.6 bits (65), Expect = 5e-04
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query: 239 LSVTYQSGPAYKFGPLVLRGIQRYDPDGARRIARLPSGQDYDQQKLLDAQQRLASSGYYD 298
           L+ +      +K   + + G+QR           L  G + D ++L+D+ + L  +GY+ 
Sbjct: 14  LNASLALAQGFKISDIRINGLQRVSAGSVFGALPLNVGDEADDRRLVDSTRALFKTGYFQ 73

Query: 299 SVFLT 303
            + L+
Sbjct: 74  DIQLS 78