Pairwise Alignments

Query, 1362 a.a., Inner membrane component of TAM transport system from Variovorax sp. SCN45

Subject, 1224 a.a., hypothetical protein from Pseudomonas simiae WCS417

 Score =  153 bits (387), Expect = 8e-41
 Identities = 224/919 (24%), Positives = 344/919 (37%), Gaps = 163/919 (17%)

Query: 496  LVLPGGSAQVEGRIAPTAGSGDIKASIDDADAVQR--WVQGLPGL-------SNVFANAS 546
            L L  G  + EG +      G    +  D  A+    WV  LPG           F N  
Sbjct: 408  LKLTAGQGKAEGHLNLQFADGITWDTALDLSALNPAYWVAELPGTLAGPLRSKGEFKNEQ 467

Query: 547  AKGSAKLDANWQGGWQTIQRRLQNATAPAQRGTAEPTLKAMLGVPRLDLHLPASEPGGAA 606
             K +A LD   +   QT         A    G  E    A      LD+ L  +   G+ 
Sbjct: 468  LKLNADLDLKGRLRGQTA------VLAAKAEGAGEQWTLA-----NLDIRLGDNRINGSG 516

Query: 607  TAVQ-LNGLRAELAGSLAQASLTLQGEATTGTQKITIDTRASGGLAGNDQWRAALASLRL 665
            +  Q L G        LAQ    L+G+   G   +    +A  G       + A A  RL
Sbjct: 517  SLQQRLAGQIDIKLARLAQLWPQLRGQVN-GRLDVAGSLKAPQGKLDLKGQQLAFADNRL 575

Query: 666  QAQDSVSPGSAPWVLELSREVTATIRSTSGNAARLDIEASAAAATLRGPVPGTVRIDWQP 725
            Q+                     T+ +T  NA R  I+   ++        GT       
Sbjct: 576  QS--------------------LTLAATLDNAQRAKIDLKGSSIQSGDTQVGT------- 608

Query: 726  LRFSQSGAAPNRVFRVQSKGQLQGLPMAWAGALGANTTLGEYGISGDLMFDG-DWDIDA- 783
            L  S  G   N+  ++   G L  L +A  G L      G    SGD+   G DW + A 
Sbjct: 609  LTASAQGDIKNQKVQLDLAGPLVKLALALDGNLDKGNWRGRLA-SGDVQAGGQDWKLQAP 667

Query: 784  ----------------------------GDTLRAKARLARQSGDIRVQAGEAALVTRIVS 815
                                           L  + +L        + +  A L      
Sbjct: 668  AKIERMADGKLTFAAHCWVSGPASLCGEDQRLMPEPKLRYHLKQFPIDSLAAFLPKDFAW 727

Query: 816  TGTGTASERTMNSATAPNGVEAPSTPAG---LRQAELRLDAQGDAVRASLTWDSERAGKI 872
             GT  A  +     + P GV A     G   +R  +  LD   D ++   T + +R    
Sbjct: 728  QGTLNADVQLDLPDSGPKGVVAVDASGGTLRVRDKDQWLDFPYDTLKLETTLNPKR---- 783

Query: 873  NADIDTRVQQRAGGW-------QWAP---DAPLGGTIKASLPNLGVWSMLAPPGWRIAGT 922
               IDT++  R G         Q  P   + P+ G       +L V     P    ++G 
Sbjct: 784  ---IDTQLNFRGGKLGELMVQAQINPLPKNKPITGNFSLVGLDLAVARPFVPMVETLSGK 840

Query: 923  LDAAATLSGNRAVPRWNGTLGADKLALRAPVEGLDLRDGRLRASLNGERVEITEFTLKGG 982
            L+    ++G    P+ NG +      +  P   + L+   ++A + GE V++      G 
Sbjct: 841  LNGNGRIAGGLLAPQVNGNVNLVGGEISGPELPISLQGLNVQAVIAGESVQLNGGWRSGK 900

Query: 983  AGSSARIAGQSGNRSTAASEARSDGGTLSATGDLSWGPASGTASGVRMAMQGQLRALRVL 1042
            AG                          S  G + WG A      V +++QG    L V 
Sbjct: 901  AGQG------------------------SLKGQIEWGQALA----VDLSLQGS--QLPVT 930

Query: 1043 VRTDRQVTLSGDLQAKLDNGQFTVRGKLKTDRAVII---LPDETAPSLGSDVVVRSAAKD 1099
            V     + ++ DL+  L N +  V GK+   R  I    LP  T       V++ S  ++
Sbjct: 931  VEPYAVLEVAPDLKISLKNDKLAVAGKVHIPRGDITVRELPPSTVKVSDDTVIIGSQTEE 990

Query: 1100 REAAEAAKRESERADAQAAKPQTAKPPDIVVNFDLGDD-FAVQGRGITTRLEGDLEIRST 1158
                               KP  A   DI V   +G+D     G G+T +++G + I   
Sbjct: 991  ------------------GKPPMAMAMDIDVV--VGEDKLNFSGFGLTAKVQGQVHIGD- 1029

Query: 1159 RLNAPPRITGEVKTVKGQYRAYGQQLDVETGVARFNGPFDNPALDILAIRPNLSQRAGVQ 1218
              N   R  GE+    G+YRAYGQ+LDV      F GP D P LDI AIR      AG++
Sbjct: 1030 --NLDTR--GELWLNDGRYRAYGQKLDVRRARLLFAGPLDQPYLDIEAIRKTDDVIAGIR 1085

Query: 1219 ITGTAQSPRVKLYSEPALSDAETLSWVILGRASATSGGESALLQQAALSLLGKIGGSGSG 1278
            ++G+A+ P  +++SEPA+S  + LS+++LGR  +T+G ++ +L QAAL  LG +G +G  
Sbjct: 1086 LSGSAEQPTTQIFSEPAMSQEQALSYLVLGRPLSTTGEDNNMLAQAALG-LGLMGSAGVT 1144

Query: 1279 GSLASRFGLDELGFKGPGSGGDLRESAVTLGKRLSKDFYITYERSIGGTFGTLFIFYDLT 1338
              LA   G+ +      GSG +   +AV    ++++   + Y   +     T+ + Y L+
Sbjct: 1145 SDLAKNLGIQDFELDTQGSGNN---TAVVASGKITEKLSLRYGVGVFEPASTIALRYLLS 1201

Query: 1339 TKLTLRGQAGQTSGLDLIY 1357
             K+ L   +G  S LD+ Y
Sbjct: 1202 KKVYLEVASGVASSLDIFY 1220