Pairwise Alignments

Query, 307 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  140 bits (354), Expect = 3e-38
 Identities = 91/307 (29%), Positives = 164/307 (53%), Gaps = 13/307 (4%)

Query: 6   LQALISGLAVGGAYALVALGFSITFTTTKTLNFSHGEFVSAGAFIGMSALFLVLGKPFDS 65
           LQ L++GL +G  Y L+A+G+++ +     +NF+HGE     A+  ++A+ L L   F  
Sbjct: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAY--LAAISLALLAYFGV 63

Query: 66  TTFGDAIPGAGAQLFALVAALGVMGLLGWLLYVLGVRPFAGRPGMAWVMSTLGFGVILQS 125
            +F   +   G  LF +V    V G+ G+ +  +  +P      +A ++S +G  +ILQ+
Sbjct: 64  ESF--PLLMLGTLLFTIV----VTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQN 117

Query: 126 VGLAIWGPKPVVVPAPVGDTVLRMFGVG---VRPQELLTLGVAVVVMFGFDRVMNRTMVG 182
                 G +   VP  +   +    G G   +   ++  L  A V M     V+  T +G
Sbjct: 118 YAQISQGARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLG 177

Query: 183 KAMRAVAQNGNVASLMGINTNAMMIGAFVVSSALAGLSGFLLA-PIAQASLFMGLTVGLK 241
           +  RA  Q+  +AS++GINT+ ++   FV+ + +A L+G L+         + G  +G+K
Sbjct: 178 RMCRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIK 237

Query: 242 GFSGAMIGGLSNPRGCVIGGFLLGVLESMVN-LWQAQWREVAVFALVILVLAFRPTGLFG 300
            F+ A++GG+ +  G ++GG +LG+ ES+ + L  + +++V  F+L++++L FRP GL G
Sbjct: 238 AFTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLG 297

Query: 301 RSTVEKV 307
           R  V KV
Sbjct: 298 RPLVAKV 304