Pairwise Alignments

Query, 307 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  162 bits (409), Expect = 1e-44
 Identities = 97/308 (31%), Positives = 176/308 (57%), Gaps = 18/308 (5%)

Query: 6   LQALISGLAVGGAYALVALGFSITFTTTKTLNFSHGEFVSAGAFIGMSALFLVLGKPFDS 65
           +Q LI+GL +G  Y L+A+G+++ +     +NF+HG+    G F  +  +FL+      +
Sbjct: 5   IQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAAL-IVFLI------A 57

Query: 66  TTFGDAIPGAGAQLFALVAALGVMGLLGWLLYVLGVRPFAGRPGMAWVMSTLGFGVILQS 125
           T+F   IP A   L  ++ A+ + GL  W++  +  RP  G   +A +++ +G  + L +
Sbjct: 58  TSFFAGIPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSN 117

Query: 126 VGLAIWGPKPVVVPAPVGDTVLRMFG-VGVRPQELLTLGVAVVVMFGFDRVMNRTMVGKA 184
                 GP+   +P+ V ++    FG + V  ++L+ + V  V++F F  ++N+T +G+A
Sbjct: 118 FIQVTQGPRNKPIPSMVTESY--HFGAITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRA 175

Query: 185 MRAVAQNGNVASLMGINTNAMMIGAFVVSSALAGLSGFL-LAPIAQASLFMGLTVGLKGF 243
            RA  Q+  +A+L+G++ +  +   F++ +ALA ++G + L     AS   G   G+K F
Sbjct: 176 QRATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAF 235

Query: 244 SGAMIGGLSNPRGCVIGGFLLGVLESMVNLWQA----QWREVAVFALVILVLAFRPTGLF 299
           + A++GG+ +  G V+GG L+G++ES   LW A     +++VA F ++  VL F+PTG+ 
Sbjct: 236 TAAVLGGIGSLPGAVLGGLLIGLIES---LWSAYFSIAYKDVAAFGILAFVLIFKPTGIL 292

Query: 300 GRSTVEKV 307
           GR  VEKV
Sbjct: 293 GRPEVEKV 300