Pairwise Alignments

Query, 274 a.a., Transmembrane regulator protein PrtR from Variovorax sp. SCN45

Subject, 245 a.a., transmembrane anti-sigma factor from Pseudomonas simiae WCS417

 Score = 96.7 bits (239), Expect = 4e-25
 Identities = 74/260 (28%), Positives = 112/260 (43%), Gaps = 22/260 (8%)

Query: 7   PPTDDELHAWVDGQLAPDRHGVVEDAIARDPAVAAKIASWHTQRDALHRLHGELLDVPVP 66
           PP++ +LHA+VD QL      V+E  +A  P VAA++ +W      L    G  L  P  
Sbjct: 5   PPSERDLHAYVDHQLLESDRRVLETYLAAHPDVAAQVHAWQHDAQLLRAALGGALQQPAN 64

Query: 67  DTLTAVLDRSQPRHAQRGAWMHRGGLAAGLLVAFAAGWLGNAQWSAPRGGAQQQLARAPA 126
             L   L R + +   R  +      AA LL+A + G +G   W A       QL  A A
Sbjct: 65  PDLDPALIRQRLKRQSRRQF----ATAAVLLLAVSLGGIGG--WHAREATQPAQLPMADA 118

Query: 127 LREFVHDASVAHAVYSPEKRHPVEVTAAEQQHLVQWLSRRLDRPLKVPDLSAQGYTLVGG 186
           ++ F         +++ +   P +        +  WL R  ++  ++PDLS  G+T V G
Sbjct: 119 MQAF--------RLFAQDGIMPADYKVQGGGTMQAWLDRYFNQAHRLPDLSTSGFTPVSG 170

Query: 187 RLLPGETGARAQFMFEDAAGERVTLYIGTLDANAAGATAARETAFRFASEGPVPSFYWVD 246
           RLL  E GA A  ++ED  G R++ YI               +A    ++      YW  
Sbjct: 171 RLLTTEQGAAAMVLYEDPQGRRISFYIRPPGPENGFLPRGSRSADGLQAQ------YWSG 224

Query: 247 QGFGYAIAGKL--PRDVLLK 264
            G+ YA+   +  P   LLK
Sbjct: 225 AGYNYALVSPVDQPGPPLLK 244