Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 56.6 bits (135), Expect = 2e-13
 Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 14/164 (8%)

Query: 8   EHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIFASQV 67
           E    LRR+      N   ADDL+Q T   A      +   + L  W+  +  N+  +  
Sbjct: 25  EQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIRNHF 84

Query: 68  RR--TPPPHAVVPLDDLPHELHGGIDSGRGQDTSLDLQRCLMQ-------LPEEQRAVLL 118
           RR    P H      +    L  G +  R  D   ++ R L +       LP E R  L 
Sbjct: 85  RRMYAKPVHC-----EFDESLWHGQEDNRNLDWEFEVNRRLEKTLSAIDHLPVEMRKTLY 139

Query: 119 LVTLEDLSYAEVAKVLGIPAGTVMSRLSRARVRLQELMDGTSAP 162
                D SY + A  L IP GTV SRLSRAR +L+        P
Sbjct: 140 ASLETDGSYQDTADALDIPIGTVRSRLSRAREQLKRATHNPKHP 183