Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 58.5 bits (140), Expect = 6e-14
 Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 13/161 (8%)

Query: 5   LLVEHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIFA 64
           L   H   L R+  +L+  A  A+++ Q+T              +  R WLF +  N   
Sbjct: 28  LYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQPQGRASFRTWLFQIARNRLI 87

Query: 65  SQVRRTPPPHAVV-PL-DDLPHELHGGIDSGRGQDTSLDLQR-------CLMQLPEEQRA 115
              R+    H +  PL D    +LH   D   G +  L L R        L  LPE+QR 
Sbjct: 88  DHWRK----HGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQARLDAALQGLPEDQRE 143

Query: 116 VLLLVTLEDLSYAEVAKVLGIPAGTVMSRLSRARVRLQELM 156
           V LL    DL   ++A + G P  TV SRL  A+ +L+ L+
Sbjct: 144 VFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLL 184