Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score =  103 bits (257), Expect = 2e-27
 Identities = 78/168 (46%), Positives = 95/168 (56%), Gaps = 9/168 (5%)

Query: 8   EHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIFASQV 67
           E +  LRR+A  LT    +ADDLVQ T+ERA S+         LRAWLFT+++  F    
Sbjct: 11  ELLARLRRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRAWLFTILYRQFLDGK 70

Query: 68  RRTPPPHAVVPLDDLPHELHGGIDSGRGQDTSL----DLQRCLMQLPEEQRAVLLLVTLE 123
           RR    HA   L       H     G   +T +    DLQ    +L  EQRA+LLLV++E
Sbjct: 71  RRERL-HARW-LSWFGRNEHDDEPVGDNLETIVLAQADLQ-AFARLTAEQRALLLLVSIE 127

Query: 124 DLSYAEVAKVLGIPAGTVMSRLSRARVRLQELMDGTSAPVRPGLRRLK 171
            LSY E A+ LGIP GTVMSRLSRAR  L+EL +G   P  P LRRLK
Sbjct: 128 GLSYKEAAQALGIPIGTVMSRLSRARNALRELTEGNPQP--PALRRLK 173