Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score =  385 bits (989), Expect = e-112
 Identities = 206/316 (65%), Positives = 243/316 (76%), Gaps = 3/316 (0%)

Query: 1   MKFTRRTLQSAAALTLLGAIVATPAFAQD--KPKVALVMKSLANEFFRTMEDGAKAHQKA 58
           + F  R L  A       A+  + AFA D  KPKV LVMKSLANEFF TM+DGAK +QK 
Sbjct: 3   LPFAGRLLAVAVLAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKE 62

Query: 59  NAAQYTLVANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILV 118
           +AA + ++ NGIK+ETDT+AQI +V QM+  K+NA+VIAPADSKALV V+K A D GI V
Sbjct: 63  HAADFDMITNGIKNETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKV 122

Query: 119 VNIDNQLDAAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVSTTFNAQ 178
           VNIDN+LD   LK K + +PFVGPDNR G+KLVGD LAK+L SGDKVGIIEGV TT NAQ
Sbjct: 123 VNIDNRLDPDVLKSKNLDIPFVGPDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTTNAQ 182

Query: 179 QRTLGYQDAMKAAGVTVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAGNDSMALGAVA 238
           QRT GY+DAM AAG+ +V  QSG WEID+G  VA+ ML E+PDLKALLAGND+MALGAV+
Sbjct: 183 QRTAGYKDAMDAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVS 242

Query: 239 AVKAAGKTGKVLVVGYDNIGAIKPMLADGRVLATADQFAAKQAVFGIETALKAIADKKKQ 298
           AV+AAGK GKVLVVGYDNI AIKPML DGRVLATADQ AA+QAVFGI+ ALK +  +K  
Sbjct: 243 AVRAAGKAGKVLVVGYDNIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVKGEKVD 302

Query: 299 SEMPAEVKTDVVLVTK 314
           S+    ++T V LV K
Sbjct: 303 SK-DGVIETPVELVLK 317