Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 307 a.a., LacI family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  101 bits (252), Expect = 2e-26
 Identities = 95/321 (29%), Positives = 162/321 (50%), Gaps = 27/321 (8%)

Query: 1   MKFTRRTLQSAAALTLLGAIVATPAFAQD-KP-KVALVMKSLANEFFRTMEDGAKAHQKA 58
           MK   +TL   A    LG   A PAFA   KP ++    + + N +F TM++   A ++A
Sbjct: 1   MKMLPKTLCLLAVSITLGT--AAPAFADAAKPIRIGASFQEINNPYFVTMKN---ALEEA 55

Query: 59  NAAQYTLVANGIKDET--DTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGI 116
            A   T+ A  I  +   D + Q+  VE M+ + I+ L+I P DS  +   +K+A   G+
Sbjct: 56  GA---TIGAKLIITDARHDVSKQVSDVEDMLQKGIDILLINPTDSVGVQSAVKSAHAAGV 112

Query: 117 LVVNIDNQLDAAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVSTTFN 176
           +VV +D Q D       G    FVG  N        + LAK +     + I++G++    
Sbjct: 113 VVVAVDAQAD-------GPLDSFVGSKNFDAGFQACEYLAKNIGDKGNIAILDGIAVV-P 164

Query: 177 AQQRTLGYQDAM-KAAGVTVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAGNDSMALG 235
             +R  G ++A+ K   + +V +Q+G+ E D+  TV   ML+  P LK + + ND+ +LG
Sbjct: 165 ILERVRGCKEAVAKHPDIKIVSIQNGKQERDQALTVTENMLQAQPTLKGIFSVNDNGSLG 224

Query: 236 AVAAVKAAGKTGKVLVVGYDNIGAIKPMLADG-RVLATADQFAAKQAVFGIETALKAIAD 294
           A++A++A+G   K++ V      AIK +   G + +AT+ Q+   Q    I  AL     
Sbjct: 225 ALSAIEASGLDVKLVSVD-GAPEAIKAIQKPGSKFIATSAQYPRDQ----IRLALGIALA 279

Query: 295 KKKQSEMPAEVKTDVVLVTKS 315
           +K  +++PA +  D+ L+ ++
Sbjct: 280 RKWGAQVPATLPVDITLIDQA 300