Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 335 a.a., xylitol ABC transporter, substrate-binding component (from data) from Pseudomonas simiae WCS417

 Score = 91.7 bits (226), Expect = 2e-23
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 16/293 (5%)

Query: 7   TLQSAAALTLLGAIVATPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKANAAQYTLV 66
           TL + AAL+LL   +A  A  +   KV   +  L  +F +      K H         L 
Sbjct: 6   TLAATAALSLLACSIAMAADGKTY-KVGAAVYGLKGQFMQNWVRELKEHPAVKDGTVQLT 64

Query: 67  ANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVNIDNQLD 126
                   D   Q   +E MV Q+ +A++  P D+KA V  +K A+   ++V+       
Sbjct: 65  V--FDGNYDALTQNNQIENMVTQRYDAILFVPIDTKAGVGTVKAAMSNDVVVI------- 115

Query: 127 AAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVSTTFNAQQRTLGYQD 186
           A+  K     VP+VG D+  G +L   A+  +L     V II+G         R  G  +
Sbjct: 116 ASNTKVADASVPYVGNDDVEGGRLQAQAMVDKLNGKGNVVIIQGPIGQSAQIDREKGELE 175

Query: 187 AM-KAAGVTVVGVQSGQWEIDKGNTVAAGMLREHP-DLKALLAGNDSMALGAVAAVKAAG 244
            + K   + ++  ++  W+  +   +    L  HP  +  ++A ND MALGAV A+K+ G
Sbjct: 176 VLGKHPDIKIIEKKTANWDRAQALALTEDWLNAHPKGINGVIAQNDDMALGAVQALKSHG 235

Query: 245 KTGK-VLVVGYDNI-GAIKPMLADGRVLATADQFAAKQAVFGIETALKAIADK 295
            T K V V   D +  AI+    D   + T  Q A  Q+   ++ AL+A+A K
Sbjct: 236 LTSKDVPVTSIDGMPDAIQAAKKD--EVTTFLQDAQAQSQGALDVALRALAGK 286