Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 309 a.a., Inositol transport system sugar-binding protein (from data) from Pseudomonas simiae WCS417

 Score = 97.1 bits (240), Expect = 5e-25
 Identities = 80/283 (28%), Positives = 133/283 (46%), Gaps = 14/283 (4%)

Query: 13  ALTLLGAIVATPAFAQDKPKVALVMKSLANEFF----RTMEDGAKAHQKANAAQYTLVAN 68
           AL L   + +  A A D  K+ + M +  + F       M+  AK++ K +  Q      
Sbjct: 9   ALALSMLLASGVASAADL-KIGVSMSAFDDTFLTYLREDMDKQAKSYPKGDGVQLQFE-- 65

Query: 69  GIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVNIDNQLDAA 128
                 D   Q+  VE  ++QK++A+++ P D+ +   +IK A    I +V ++ + D+ 
Sbjct: 66  --DARADVVKQLSQVENFISQKVDAIIVNPVDTASTANIIKAATAAKIPLVFVNRRPDSQ 123

Query: 129 ALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVSTTFNAQQRTLGYQDAM 188
            L      V  V  D+    KL    +A++L     + I+ G     +   RT G ++ +
Sbjct: 124 TLAPG---VAAVTSDDVEAGKLQMQYIAEKLGGKGNIVILLGDLANNSTTNRTKGVKEVL 180

Query: 189 -KAAGVTVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAGNDSMALGAVAAVKAAGKTG 247
            K  G+ +   Q+G W  D+G T+    L +  D +A+L+ ND MA+GA  A+K+AGK G
Sbjct: 181 TKYPGIKIEQEQTGIWLRDRGMTLVNDWLTQGRDFQAVLSNNDEMAIGAAMALKSAGKKG 240

Query: 248 KVLVVGYDNIGAIKPMLADGRVLATADQFAAKQAVFGIETALK 290
            VL+ G D        +  G +  +A Q A  QA   +ETA K
Sbjct: 241 -VLIAGVDGTPDGLNAITKGDMTVSAFQDAKGQADKSVETARK 282