Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 319 a.a., ribose ABC transporter, periplasmic ribose-binding subunit from Pseudomonas putida KT2440

 Score =  391 bits (1004), Expect = e-113
 Identities = 207/315 (65%), Positives = 249/315 (79%), Gaps = 1/315 (0%)

Query: 1   MKFTRRTLQSAAALTLLGAIVATPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKANA 60
           + F  R L  A   +L  A+  + A A+DKPKVALVMKSLANEFFRTMEDGAK +QK +A
Sbjct: 3   LPFPGRLLALAVISSLSLALPLSAAHAEDKPKVALVMKSLANEFFRTMEDGAKDYQKTHA 62

Query: 61  AQYTLVANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVN 120
            ++ L+ANGIK+ETDT  QI++VEQMV     ALVIAPADSKALV  +K A+D+G++V+N
Sbjct: 63  DEFELIANGIKNETDTGEQIRIVEQMVNAGAKALVIAPADSKALVSAVKKAMDQGVVVIN 122

Query: 121 IDNQLDAAALKEKGIQVPFVGPDNRAGAKLVGDALAKE-LKSGDKVGIIEGVSTTFNAQQ 179
           IDN+LD   LK KGI VPFVGPDNR GA+LVGD LA + LK+GD+VGIIEGVSTT NAQQ
Sbjct: 123 IDNRLDPDLLKSKGISVPFVGPDNRKGARLVGDYLASQKLKAGDQVGIIEGVSTTTNAQQ 182

Query: 180 RTLGYQDAMKAAGVTVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAGNDSMALGAVAA 239
           RT G++DAM AA + +V VQSG WEIDKGN VAA ML E+PDLKALLAGNDSMALGAV+A
Sbjct: 183 RTAGFKDAMDAAQMKIVSVQSGNWEIDKGNAVAASMLNEYPDLKALLAGNDSMALGAVSA 242

Query: 240 VKAAGKTGKVLVVGYDNIGAIKPMLADGRVLATADQFAAKQAVFGIETALKAIADKKKQS 299
           V+AAGKTG+V VVGYDNI AIKPML DGRVLAT DQ A++QAV+GI+ ALK +  +K   
Sbjct: 243 VRAAGKTGQVQVVGYDNINAIKPMLEDGRVLATLDQAASQQAVYGIQAALKMVKGEKPDV 302

Query: 300 EMPAEVKTDVVLVTK 314
           +    ++T V L+TK
Sbjct: 303 DADNVIQTPVELITK 317