Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 296 a.a., ABC-type sugar transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  150 bits (379), Expect = 4e-41
 Identities = 102/300 (34%), Positives = 165/300 (55%), Gaps = 16/300 (5%)

Query: 7   TLQSAAALTLLGAIVATPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKANAAQYTLV 66
           TL SA AL+   A V+  A A+D   +ALV+ +L N FF +++DGA+  ++A+   Y LV
Sbjct: 8   TLVSAVALS---ATVSANAMAKDT--IALVVSTLNNPFFVSLKDGAQ--KEADKLGYNLV 60

Query: 67  ANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVNIDNQLD 126
              +  + + A ++  V+ +  +    L+I P DS A+   +K A    I V+ +D Q  
Sbjct: 61  V--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAKIPVITLDRQAS 118

Query: 127 AAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVSTTFNAQQRTLGYQD 186
                 KG  V  +  DN  G K+ GD +AK+   G KV  ++G++ T  A++R  G+Q 
Sbjct: 119 ------KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 172

Query: 187 AMKAAGVTVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAGNDSMALGAVAAVKAAGKT 246
           A+ A    V+  Q   ++  KG  V   +L  HPD++A+ A ND MALGA+ A++ AGK+
Sbjct: 173 AVAAHKFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS 232

Query: 247 GKVLVVGYDNIGAIKPMLADGRVLATADQFAAKQAVFGIETALKAIADKKKQSEMPAEVK 306
             V+VVG+D     +  + DG++ AT  Q   +    G+ETA K +  +K Q++ P ++K
Sbjct: 233 -DVMVVGFDGTPDGEKAVNDGKLAATIAQLPEQIGATGVETADKVLKGEKVQAKYPVDLK 291