Pairwise Alignments

Query, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 517 a.a., Inositol transport system ATP-binding protein (from data) from Pseudomonas simiae WCS417

 Score =  337 bits (863), Expect = 9e-97
 Identities = 187/496 (37%), Positives = 295/496 (59%), Gaps = 10/496 (2%)

Query: 9   VLSLSTMGKDYAAPV-LDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLL 67
           +L +  + K +   V L DV L +  G VLAL GENGAGKSTL KI+ G+ QP  G++ L
Sbjct: 23  LLEIVNISKGFPGVVALADVQLRVRPGTVLALMGENGAGKSTLMKIIAGIYQPDAGEIRL 82

Query: 68  DGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLP-SKTGWIRRGKLNELAA 126
            G+P    +   A++ G+ M+ QEL L+  +S+AEN+ + R   +    +   +++   A
Sbjct: 83  RGKPIVFETPLAAQKAGIAMIHQELNLMPHMSIAENIWIGREQLNSLHMVNHREMHRCTA 142

Query: 127 RQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLFE 186
             LA++ + N+DP   V  L I ++QMVEIA+ +  D+ +L++DEPT+ +T +E +HLF 
Sbjct: 143 ELLARLRI-NLDPEEQVGNLSIAERQMVEIAKAVSYDSDILIMDEPTSAITEKEVAHLFS 201

Query: 187 QIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRMVGRAV 246
            I  LK++G  IVY++H++ E+  IAD VAV RDG  + ++    +    L+  MVGR +
Sbjct: 202 IIADLKSQGKGIVYITHKMNEVFAIADEVAVFRDGHYIGLQRADSMNSDSLISMMVGREL 261

Query: 247 HEHEGRERRTAGPVLLSARGIGRAQVVRDVDIDLRAGEVMGLAGLVGSGRTELVRLLFGA 306
            +         G +LL+ R +    V +DV  DL AGE++G+AGL+GSGRT +   +FG 
Sbjct: 262 SQLFPLRETPIGDLLLTVRDLTLDGVFKDVSFDLHAGEILGIAGLMGSGRTNVAETIFGI 321

Query: 307 DRADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSIRVNATLS 366
             +  G+ITL      +         P  AI  G  L+TEDRK  GL    S+  N  ++
Sbjct: 322 TPSSSGQITLDGKAVRIS-------DPHMAIEKGFALLTEDRKLSGLFPCLSVLENMEMA 374

Query: 367 DLGAISRAGWLQRAKERGIAQKLVELLRIRSRSIEQPVATLSGGNQQKVVFARWLHRECK 426
            L   +  G++Q+   R + + + + LR+++ S+EQ + TLSGGNQQK + ARWL    +
Sbjct: 375 VLPHYTGNGFIQQKALRALCEDMCKKLRVKTPSLEQCIDTLSGGNQQKALLARWLMTNPR 434

Query: 427 VLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGVMSAGRLVA 486
           +L+LDEPTRG+DVGA+A++Y  +  +   G A++M+SS+L E++ M DR+ VM  G L+ 
Sbjct: 435 LLILDEPTRGIDVGAKAEIYRLIAFLASEGMAVIMISSELPEVLGMSDRVMVMHEGELMG 494

Query: 487 VFERGEWTEQSLLAAA 502
             +R E T++ ++  A
Sbjct: 495 TLDRSEATQEKVMQLA 510



 Score = 99.0 bits (245), Expect = 4e-25
 Identities = 69/234 (29%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 23  VLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLLDGQPFAPGSRRDAER 82
           V  DVS  L+AGE+L + G  G+G++ +++ + G+   + GQ+ LDG+         A  
Sbjct: 287 VFKDVSFDLHAGEILGIAGLMGSGRTNVAETIFGITPSSSGQITLDGKAVRISDPHMAIE 346

Query: 83  LGVRMVMQEL---GLVTTLSVAENLLLDRLPSKTGWIRRGKLNELAARQLAKIGMQNIDP 139
            G  ++ ++    GL   LSV EN+ +  LP  TG    G + + A R L +   + +  
Sbjct: 347 KGFALLTEDRKLSGLFPCLSVLENMEMAVLPHYTG---NGFIQQKALRALCEDMCKKLRV 403

Query: 140 ATP-----VARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLFEQIELLKAR 194
            TP     +  L  G QQ   +AR L  + R+L+LDEPT  +     + ++  I  L + 
Sbjct: 404 KTPSLEQCIDTLSGGNQQKALLARWLMTNPRLLILDEPTRGIDVGAKAEIYRLIAFLASE 463

Query: 195 GVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRMVG-RAVH 247
           G+A++ +S  L E+  ++DRV V+ +G L+     +   + +++Q   G  AVH
Sbjct: 464 GMAVIMISSELPEVLGMSDRVMVMHEGELMGTLDRSEATQEKVMQLASGMTAVH 517