Pairwise Alignments

Query, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 500 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  327 bits (838), Expect = 7e-94
 Identities = 203/496 (40%), Positives = 281/496 (56%), Gaps = 11/496 (2%)

Query: 10  LSLSTMGKDY-AAPVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLLD 68
           L    +GK +     LD +S   + G+V AL GENGAGKSTL KI+ G   P  G + + 
Sbjct: 6   LRFDGIGKTFPGVKALDGISFSAHPGQVHALMGENGAGKSTLLKILGGAYIPNSGTLHIG 65

Query: 69  GQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPSKTGWIRRGKLNELAARQ 128
            Q  A  S  D+   GV ++ QEL LV  +SVAENL L  LPS+ G + RG L + A   
Sbjct: 66  EQVMAFKSAADSIASGVAVIHQELHLVPEMSVAENLFLGHLPSRFGVVNRGLLRKQALAC 125

Query: 129 LAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLFEQI 188
           L  +    IDPA  + RL +GQ+Q+VEIA+ L     V+  DEPT+ L+ RE   L   I
Sbjct: 126 LKGLA-DEIDPAEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 184

Query: 189 ELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDV-RAMAGVRESELVQRMVGRAVH 247
             L+  G  ++YVSHR+EE+ RI + V V +DGR V     M+ +   +LV  MVGR + 
Sbjct: 185 ARLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQLVTCMVGRDIQ 244

Query: 248 EHEGRERRTAGPVLLSARGIGRAQVVRDVDIDLRAGEVMGLAGLVGSGRTELVRLLFGAD 307
           +      R  G V L   G+    +   V  ++R GE++GL GLVG+GRTEL RLL G +
Sbjct: 245 DIYDYRPREHGEVALKVDGLLGPGLREPVSFNVRKGEILGLFGLVGAGRTELFRLLSGLE 304

Query: 308 RADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSIRVNATLSD 367
           RA  G++ L      +Q       SP  AI AG+ L  EDRK +G++   S+  N  +S 
Sbjct: 305 RASAGQLELCGEPLHLQ-------SPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISA 357

Query: 368 LGAISRAGWLQRAK-ERGIAQKLVELLRIRSRSIEQPVATLSGGNQQKVVFARWLHRECK 426
            GA S  GWL R   E+G A + +  +++++ +  Q +  LSGGNQQK +  RWL    K
Sbjct: 358 RGAHSTFGWLLREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMK 417

Query: 427 VLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGVMSAGRLVA 486
           VLLLDEPTRG+D+GA+A++Y  +  +   G A+++VSSDL E+M + DRI V+  G L  
Sbjct: 418 VLLLDEPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADRILVLCEGALRG 477

Query: 487 VFERGEWTEQSLLAAA 502
              R   TE +LL  A
Sbjct: 478 EQTREHATESNLLQLA 493



 Score =  100 bits (248), Expect = 2e-25
 Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 25  DDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLLDGQPFAPGSRRDAERLG 84
           + VS  +  GE+L L G  GAG++ L +++ GL + + GQ+ L G+P    S RDA   G
Sbjct: 271 EPVSFNVRKGEILGLFGLVGAGRTELFRLLSGLERASAGQLELCGEPLHLQSPRDAIAAG 330

Query: 85  VRMVMQEL---GLVTTLSVAENLLLDR--LPSKTGWI-RRGKLNELAARQLAKIGMQNID 138
           V +  ++    G++   SVAEN+ +      S  GW+ R G     A +Q+  + ++  +
Sbjct: 331 VLLCPEDRKKEGIIPLSSVAENINISARGAHSTFGWLLREGWEKGNADQQINAMKVKTPN 390

Query: 139 PATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLFEQIELLKARGVAI 198
            A  +  L  G QQ   + R L    +VL+LDEPT  +     + +++ I  L A+G+A+
Sbjct: 391 AAQKIMYLSGGNQQKSILGRWLSMPMKVLLLDEPTRGIDIGAKAEIYQIIHNLAAQGIAV 450

Query: 199 VYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRMVGRAV 246
           + VS  L E+  IADR+ VL +G L   +      ES L+Q  + R+V
Sbjct: 451 IVVSSDLMEVMGIADRILVLCEGALRGEQTREHATESNLLQLALPRSV 498