Pairwise Alignments
Query, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45
Subject, 504 a.a., Galactofuranose ABC transporter, ATP-binding protein from Variovorax sp. SCN45
Score = 336 bits (861), Expect = 1e-96
Identities = 196/486 (40%), Positives = 291/486 (59%), Gaps = 24/486 (4%)
Query: 7 QPVLSLSTMGKDYAA-PVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQM 65
QPVL+L + K + PVL DV L L AGE+ AL G+NGAGKSTL K++ G++ + G+M
Sbjct: 5 QPVLALKGIHKQFGGIPVLRDVQLRLYAGEIHALMGQNGAGKSTLIKVLTGVLPSSGGEM 64
Query: 66 LLDGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPS-------KTGWIRR 118
LLDGQP P S +A++LG+ V QE+ L LSVAEN+ R P + W
Sbjct: 65 LLDGQPIRPASPLEAQKLGISTVYQEVNLCPNLSVAENVFAGRYPRCGVAQGFRIDW--- 121
Query: 119 GKLNELAARQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTP 178
+N A LA+IG+ +ID ++ + QQMV IAR L ++VL+LDEPT+ L
Sbjct: 122 AGVNRRAEELLARIGL-DIDVTRLLSSYSVAVQQMVAIARALGVSSKVLILDEPTSSLDD 180
Query: 179 RETSHLFEQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELV 238
E LFE + L+ G+AIV+V+H L ++ ++DR+ VLR+G + A + L+
Sbjct: 181 DEVEKLFEVLRRLRGEGLAIVFVTHFLNQMYAVSDRITVLRNGGWIGEWKAAELGPQALI 240
Query: 239 QRMVGRAVHEHEGRERRT-----AGPVLLSARGIGRAQVVRDVDIDLRAGEVMGLAGLVG 293
M+GR + R A P LL A G+G+A ++ D+ +RAGEV+G+AGL+G
Sbjct: 241 AAMLGRELAAQSARPAALPAFDEAAPALLQAEGLGQAGQLQATDLRVRAGEVVGIAGLLG 300
Query: 294 SGRTELVRLLFGADRADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGL 353
+GRTEL RLLFG + DRG + V + +P AIR G+ L E+RK+ G+
Sbjct: 301 AGRTELARLLFGLETPDRGVLK-------VDGRSVSFSNPADAIREGLALCPEERKTDGI 353
Query: 354 LLTQSIRVNATLSDLGAISRAGWLQRAKERGIAQKLVELLRIRSRSIEQPVATLSGGNQQ 413
+ S+R N L+ + +L A++ +AQ+ V+ L I++ S+E P+ LSGGNQQ
Sbjct: 354 VSELSVRENIALALQARLGTKRFLSHAEQTEMAQRFVKSLGIKTASVETPIGLLSGGNQQ 413
Query: 414 KVVFARWLHRECKVLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMC 473
K + ARWL E +VL+LDEPTRG+DV A+ ++ E+ R+ AG A++ +SS++ E++ +
Sbjct: 414 KAMIARWLATEPRVLILDEPTRGIDVAAKQEIMEEILRLAKAGMAVIFISSEMSEVVRVA 473
Query: 474 DRIGVM 479
RI V+
Sbjct: 474 HRIVVL 479
Score = 115 bits (287), Expect = 5e-30
Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 11/243 (4%)
Query: 3 DNRAQPVLSLSTMGKDYAAPVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTR 62
D A +L +G+ A L L + AGEV+ + G GAG++ L++++ GL P R
Sbjct: 262 DEAAPALLQAEGLGQ---AGQLQATDLRVRAGEVVGIAGLLGAGRTELARLLFGLETPDR 318
Query: 63 GQMLLDGQPFAPGSRRDAERLGVRMVMQEL---GLVTTLSVAENLLLD---RLPSKTGWI 116
G + +DG+ + + DA R G+ + +E G+V+ LSV EN+ L RL +K ++
Sbjct: 319 GVLKVDGRSVSFSNPADAIREGLALCPEERKTDGIVSELSVRENIALALQARLGTKR-FL 377
Query: 117 RRGKLNELAARQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAML 176
+ E+A R + +G++ TP+ L G QQ IAR L + RVL+LDEPT +
Sbjct: 378 SHAEQTEMAQRFVKSLGIKTASVETPIGLLSGGNQQKAMIARWLATEPRVLILDEPTRGI 437
Query: 177 TPRETSHLFEQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESE 236
+ E+I L G+A++++S + E+ R+A R+ VLRD + V G E E
Sbjct: 438 DVAAKQEIMEEILRLAKAGMAVIFISSEMSEVVRVAHRIVVLRDRKKVG-ELPGGATEDE 496
Query: 237 LVQ 239
+ +
Sbjct: 497 VYE 499
Score = 91.3 bits (225), Expect = 8e-23
Identities = 85/274 (31%), Positives = 135/274 (49%), Gaps = 23/274 (8%)
Query: 261 LLSARGI----GRAQVVRDVDIDLRAGEVMGLAGLVGSGRTELVRLLFGADRADRGEITL 316
+L+ +GI G V+RDV + L AGE+ L G G+G++ L+++L G + GE+ L
Sbjct: 7 VLALKGIHKQFGGIPVLRDVQLRLYAGEIHALMGQNGAGKSTLIKVLTGVLPSSGGEMLL 66
Query: 317 YENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSIRVNATLSDLGAISRAGW 376
+ QP++ A SP++A + GI V ++ L S+ N G R G
Sbjct: 67 --DGQPIRPA-----SPLEAQKLGISTVYQE---VNLCPNLSVAENVFA---GRYPRCGV 113
Query: 377 LQ--RAKERGIAQKLVELLRIRSRSIE--QPVATLSGGNQQKVVFARWLHRECKVLLLDE 432
Q R G+ ++ ELL I+ + +++ S QQ V AR L KVL+LDE
Sbjct: 114 AQGFRIDWAGVNRRAEELLARIGLDIDVTRLLSSYSVAVQQMVAIARALGVSSKVLILDE 173
Query: 433 PTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGVMSAGRLVAVFERGE 492
PT +D L+ L R+ G A++ V+ L ++ A+ DRI V+ G + ++ E
Sbjct: 174 PTSSLDDDEVEKLFEVLRRLRGEGLAIVFVTHFLNQMYAVSDRITVLRNGGWIGEWKAAE 233
Query: 493 WTEQSLLAAAFS-DATGRAAAPTLAPA-ASVAPA 524
Q+L+AA + ++A P PA APA
Sbjct: 234 LGPQALIAAMLGRELAAQSARPAALPAFDEAAPA 267