Pairwise Alignments

Query, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 507 a.a., ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  328 bits (841), Expect = 3e-94
 Identities = 204/504 (40%), Positives = 291/504 (57%), Gaps = 13/504 (2%)

Query: 4   NRAQPVLSLSTMGKDYAAP-VLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTR 62
           N    +L L  + K + A   L  V   L+AGE+ AL GENGAGKSTL  I+ G+ QP  
Sbjct: 2   NAVSALLELKGISKRFGASRALTGVDFTLHAGEIHALCGENGAGKSTLMNIIDGIHQPDE 61

Query: 63  GQMLLDGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPS-KTGWIRRGKL 121
           G+  LDG+         A RLG+ +V QE+ L    +VAEN+ +  + + K  W+    L
Sbjct: 62  GETSLDGRKVVIDGPAHAMRLGIGLVHQEIALCGDATVAENIFMPEINAGKHAWMNYASL 121

Query: 122 NELAARQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRET 181
           NE AAR L ++G Q++DPA  V  L I  QQ++EIA+ L  D +VL+LDEPTA LT  E+
Sbjct: 122 NERAARVLQRLG-QDVDPAALVKDLSISTQQLIEIAKALTLDCKVLILDEPTAALTDNES 180

Query: 182 SHLFEQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRM 241
           + LF+ +  LKA+G+ I+Y+SHR+ E+     RV VLRDGR V    +A +    LV+RM
Sbjct: 181 AALFKVLHDLKAQGIGIIYISHRMAEIFAHCSRVTVLRDGRNVHCGPLAELDADALVRRM 240

Query: 242 VGRAVHEHEGRERRTA--GPVLLSARGIGRAQVVRDVDIDLRAGEVMGLAGLVGSGRTEL 299
           VGR +  +   +   A  G  +L    I   + V  V   LR GE++G+AGL+G+GR+EL
Sbjct: 241 VGRDLGNYYPPKHGDAAHGEPVLEVSDIADGERVHGVSFTLRRGEILGIAGLMGAGRSEL 300

Query: 300 VRLLFGADRADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSI 359
              + G   A RG + L      +       R    A+R GI  ++EDRK+ G+ L   I
Sbjct: 301 AETVCGLRTATRGAVRLRGRTLAI-------RKYSDALREGIAYLSEDRKAAGVYLDLPI 353

Query: 360 RVNATLSDLGAIS-RAGWLQRAKERGIAQKLVELLRIRSRSIEQPVATLSGGNQQKVVFA 418
             N     L  +S R G LQRA ER +A  L   L+++S  ++  VA+LSGGNQQKV  A
Sbjct: 354 AQNIASMALRRVSSRFGLLQRAAERKLALDLGGKLKLKSDGVDIDVASLSGGNQQKVAIA 413

Query: 419 RWLHRECKVLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGV 478
           + L     VLL+DEPTRGVDVGA+++++  L  +   G  ++++SS+L E++ +CDR  V
Sbjct: 414 KLLATNPSVLLMDEPTRGVDVGAKSEIHHILRELASQGVGVVVISSELPEIIGLCDRALV 473

Query: 479 MSAGRLVAVFERGEWTEQSLLAAA 502
           +  GRL    +  E TE++LL  A
Sbjct: 474 IRDGRLAGEVQDNEMTEEALLRLA 497



 Score = 83.6 bits (205), Expect = 2e-20
 Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 20/269 (7%)

Query: 261 LLSARGI----GRAQVVRDVDIDLRAGEVMGLAGLVGSGRTELVRLLFGADRADRGEITL 316
           LL  +GI    G ++ +  VD  L AGE+  L G  G+G++ L+ ++ G  + D GE +L
Sbjct: 7   LLELKGISKRFGASRALTGVDFTLHAGEIHALCGENGAGKSTLMNIIDGIHQPDEGETSL 66

Query: 317 YENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSIRVNATLSDLGAISRAGW 376
                 +         P  A+R GIGLV ++    G     ++  N  + ++ A   A W
Sbjct: 67  DGRKVVID-------GPAHAMRLGIGLVHQEIALCG---DATVAENIFMPEINAGKHA-W 115

Query: 377 LQRAKERGIAQKLVELLRIRSRSIEQP--VATLSGGNQQKVVFARWLHRECKVLLLDEPT 434
           +  A    + ++   +L+   + ++    V  LS   QQ +  A+ L  +CKVL+LDEPT
Sbjct: 116 MNYAS---LNERAARVLQRLGQDVDPAALVKDLSISTQQLIEIAKALTLDCKVLILDEPT 172

Query: 435 RGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGVMSAGRLVAVFERGEWT 494
             +     A L+  L  +   G  ++ +S  + E+ A C R+ V+  GR V      E  
Sbjct: 173 AALTDNESAALFKVLHDLKAQGIGIIYISHRMAEIFAHCSRVTVLRDGRNVHCGPLAELD 232

Query: 495 EQSLLAAAFSDATGRAAAPTLAPAASVAP 523
             +L+        G    P    AA   P
Sbjct: 233 ADALVRRMVGRDLGNYYPPKHGDAAHGEP 261