Pairwise Alignments

Query, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 499 a.a., Arabinose import ATP-binding protein AraG from Pseudomonas lactucae CFBP13502

 Score =  325 bits (834), Expect = 2e-93
 Identities = 201/496 (40%), Positives = 283/496 (57%), Gaps = 11/496 (2%)

Query: 10  LSLSTMGKDY-AAPVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLLD 68
           L  + +GK++     L  +S      EV AL GENGAGKSTL KI+ G   P+ G + + 
Sbjct: 6   LRFNGIGKEFPGVKALAQISFEARPHEVHALMGENGAGKSTLLKILGGAYIPSSGTLQIG 65

Query: 69  GQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPSKTGWIRRGKLNELAARQ 128
            Q  A     D+   GV ++ QEL LV  +SVAENL L  LP++ G + RG L + A   
Sbjct: 66  EQTMAFKCAADSIASGVAVIHQELHLVPEMSVAENLFLGHLPTRLGVVNRGLLRKQALAC 125

Query: 129 LAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLFEQI 188
           L  +    IDP   + RL +GQ+Q+VEIA+ L     V+  DEPT+ L+ RE   L   I
Sbjct: 126 LKGLA-DEIDPDEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 184

Query: 189 ELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDV-RAMAGVRESELVQRMVGRAVH 247
             L+  G  ++YVSHR+EE+ RI + V V +DGR V     M+ +   +LV  MVGR + 
Sbjct: 185 TRLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQLVTCMVGRDIQ 244

Query: 248 EHEGRERRTAGPVLLSARGIGRAQVVRDVDIDLRAGEVMGLAGLVGSGRTELVRLLFGAD 307
           +      R  G V L   G+    +   V  ++R GE++GL GLVG+GRTEL RLL G +
Sbjct: 245 DIYDYRPREQGEVALKVDGLLGPGLREPVSFEVRKGEILGLFGLVGAGRTELFRLLSGLE 304

Query: 308 RADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSIRVNATLSD 367
           RA  G + L    +P+Q      RSP  AI AG+ L  EDRK +G++   S+  N  +S 
Sbjct: 305 RASAGSLELC--GEPLQL-----RSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISA 357

Query: 368 LGAISRAGWLQR-AKERGIAQKLVELLRIRSRSIEQPVATLSGGNQQKVVFARWLHRECK 426
            GA S  GWL R   E+G A+  ++ +++++ + +Q +  LSGGNQQK +  RWL    K
Sbjct: 358 RGAHSTFGWLLRDGWEKGNAEHQIKAMKVKTPNADQKIMYLSGGNQQKAILGRWLSMPMK 417

Query: 427 VLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGVMSAGRLVA 486
           VLLLDEPTRG+D+GA++++Y  +  +   G A+++VSSDL E+M + DRI VMS G L  
Sbjct: 418 VLLLDEPTRGIDIGAKSEIYQIIHNLAANGIAVIVVSSDLMEVMGISDRILVMSEGALTG 477

Query: 487 VFERGEWTEQSLLAAA 502
              R +  E  LL  A
Sbjct: 478 EVTRDQADEARLLQLA 493



 Score = 92.4 bits (228), Expect = 4e-23
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 25  DDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLLDGQPFAPGSRRDAERLG 84
           + VS  +  GE+L L G  GAG++ L +++ GL + + G + L G+P    S RDA   G
Sbjct: 271 EPVSFEVRKGEILGLFGLVGAGRTELFRLLSGLERASAGSLELCGEPLQLRSPRDAIAAG 330

Query: 85  VRMVMQEL---GLVTTLSVAENLLLDR--LPSKTGWIRR-GKLNELAARQLAKIGMQNID 138
           V +  ++    G++   SVAEN+ +      S  GW+ R G     A  Q+  + ++  +
Sbjct: 331 VLLCPEDRKKEGIIPLSSVAENINISARGAHSTFGWLLRDGWEKGNAEHQIKAMKVKTPN 390

Query: 139 PATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLFEQIELLKARGVAI 198
               +  L  G QQ   + R L    +VL+LDEPT  +     S +++ I  L A G+A+
Sbjct: 391 ADQKIMYLSGGNQQKAILGRWLSMPMKVLLLDEPTRGIDIGAKSEIYQIIHNLAANGIAV 450

Query: 199 VYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRMVGR 244
           + VS  L E+  I+DR+ V+ +G L          E+ L+Q  + R
Sbjct: 451 IVVSSDLMEVMGISDRILVMSEGALTGEVTRDQADEARLLQLALPR 496