Pairwise Alignments

Query, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 500 a.a., predicted sugar transporter subunit: ATP-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  326 bits (835), Expect = 1e-93
 Identities = 190/511 (37%), Positives = 300/511 (58%), Gaps = 24/511 (4%)

Query: 1   MNDNRAQPVLSLSTMGKDY-AAPVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQ 59
           M  ++ Q +L    + K +     LD+V   L  GE++AL GENGAGKSTL K + G+  
Sbjct: 1   MTTDQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYH 60

Query: 60  PTRGQMLLDGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPSKTGWIRRG 119
             RG + L+GQ  +P +   A++LG+  V QE+ L+  +SVA+NL + R P + G +RR 
Sbjct: 61  ADRGTIWLEGQAISPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPKRFGLLRRK 120

Query: 120 KLNELAARQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPR 179
           ++ + A   +A  G  ++D   P+ R  +  QQ+V I R +    +VL+LDEPTA L  +
Sbjct: 121 EMEKRATELMASYGF-SLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQ 179

Query: 180 ETSHLFEQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQ 239
           E   LF+ +  L+ RGV++++V+H L+++ +++DR+ VLR+G  V  R    + + ELV+
Sbjct: 180 EVELLFDLMRQLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVK 239

Query: 240 RMVGRAVHEHEGRERRTAGPVLLSARGI------GRAQVVRDVDIDLRAGEVMGLAGLVG 293
            M+GR +  H     + AG  LLS + +      G+   +   D+++R GE++GLAGL+G
Sbjct: 240 MMLGRELDTHA---LQRAGRTLLSDKPVAAFKNYGKKGTIAPFDLEVRPGEIVGLAGLLG 296

Query: 294 SGRTELVRLLFGADRADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGL 353
           SGRTE   ++FG   AD G   +    Q +       RSP QA   GIG   EDRK+ G+
Sbjct: 297 SGRTETAEVIFGIKPADSGTALIKGKPQNL-------RSPHQASVLGIGFCPEDRKTDGI 349

Query: 354 LLTQSIRVNATLSDLGAISRAGWLQ---RAKERGIAQKLVELLRIRSRSIEQPVATLSGG 410
           +   S+R N  L+     ++ GWL+   R +++ IA++ +  L IR+ S EQP+  LSGG
Sbjct: 350 IAAASVRENIILA---LQAQRGWLRPISRKEQQEIAERFIRQLGIRTPSTEQPIEFLSGG 406

Query: 411 NQQKVVFARWLHRECKVLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELM 470
           NQQKV+ +RWL    + L+LDEPTRG+DVGA A++   ++ +   G ALL++SS+L EL+
Sbjct: 407 NQQKVLLSRWLLTRPQFLILDEPTRGIDVGAHAEIIRLIETLCADGLALLVISSELEELV 466

Query: 471 AMCDRIGVMSAGRLVAVFERGEWTEQSLLAA 501
              DR+ +M   + VA     E +  +++ A
Sbjct: 467 GYADRVIIMRDRKQVAEIPLAELSVPAIMNA 497