Pairwise Alignments

Query, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 510 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  346 bits (888), Expect = 1e-99
 Identities = 204/501 (40%), Positives = 297/501 (59%), Gaps = 10/501 (1%)

Query: 8   PVLSLSTMGKDY-AAPVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQML 66
           PVL +  + + +     LD V + L  G+V AL GENGAGKSTL KI+ G+ +P  G++L
Sbjct: 18  PVLEMRGISQIFPGVKALDGVDIALYPGKVTALIGENGAGKSTLVKILTGIYRPNEGEIL 77

Query: 67  LDGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPS-KTGWIRRGKLNELA 125
           LDG+     S +DA   GV  + QE  L   LSV EN+ L   P  + G I    +NE A
Sbjct: 78  LDGKAVHFHSAQDAIDAGVTAIHQETVLFDELSVGENIFLGHAPKGRFGLIDWKTINERA 137

Query: 126 ARQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLF 185
              L ++    IDP   +  L I Q+ +V IAR L  + R++++DEPTA L+ +E   LF
Sbjct: 138 RILLEQLE-STIDPTIRLKDLSIAQRHLVAIARALSVEARIVIMDEPTAALSRKEIDDLF 196

Query: 186 EQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRMVGRA 245
             +E LK +G AI+++SH+ +E+  IA+  AV RDG++V    +A   + E+V+ MVGR 
Sbjct: 197 RIVENLKRQGKAILFISHKFDEVYEIAENYAVFRDGKMVGAGTLATTPQDEIVRLMVGRD 256

Query: 246 VHEHEGRERRTAGPVLLSARGIGRAQVVRDVDIDLRAGEVMGLAGLVGSGRTELVRLLFG 305
           V     ++  T GP +LS R        RD+ +DLR GE++GL GL+G+GR+EL + LFG
Sbjct: 257 VTNAFPKQAVTLGPTVLSVRDYSHQTEFRDISLDLRKGEILGLYGLIGAGRSELCQSLFG 316

Query: 306 ADRADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSIRVNATL 365
             R   GE+TL  + QP+       RSP  AIRAGI  V E+R   GL L   I  N +L
Sbjct: 317 ITRPASGEVTL--DGQPLT-----IRSPEDAIRAGIVYVPEERGRHGLALDMPIYQNMSL 369

Query: 366 SDLGAISRAGWLQRAKERGIAQKLVELLRIRSRSIEQPVATLSGGNQQKVVFARWLHREC 425
             L   SR G+L  A E  +A+K    L +R+ ++  PV TLSGGNQQKVV  +WL  + 
Sbjct: 370 PSLTRTSRKGFLTAANEFALARKYAARLDLRAAALSVPVGTLSGGNQQKVVIGKWLATKP 429

Query: 426 KVLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGVMSAGRLV 485
           KV++LDEPT+G+D+G++A ++  +  +   G +++M+SS+L E++ M DR  VM  G + 
Sbjct: 430 KVIILDEPTKGIDIGSKAAVHGFISELAAEGLSIIMISSELPEILGMSDRAIVMREGLMA 489

Query: 486 AVFERGEWTEQSLLAAAFSDA 506
             FER E++ + L+ AA  +A
Sbjct: 490 GQFERAEFSPEKLVRAATGNA 510