Pairwise Alignments

Query, 221 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 21  DDQLMLAYAQGDAAAFDVLYARHEGGLFRFVKRLLGARLAAQADEVFQDTWVRIISARDS 80
           D QL+    +GD  AFD+L  +++  +   + R +     AQ  +V Q+ +++   A  +
Sbjct: 7   DQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQ--DVAQEAFIKAYRALGN 64

Query: 81  FSPQGATWRTWAFTIAHNLAMDRLRVSGREVALDAHPDND--SDPVPTLDRGVRGAVDAA 138
           F    A + TW + IA N A + L   GR       PD+D  S+     D G  G  D  
Sbjct: 65  FRGDSAFY-TWLYRIAINTAKNYLVSRGRRP-----PDSDVSSEDAEFYD-GDHGLKDLE 117

Query: 139 AHPSAEELAFWRAAGRRLLACLDELPTDQRAAFLLHHEDGLTVEALAASLEIGFETVRSR 198
              S E           +   + +LP D R A  L   DGL+ E +A+ ++    TVRSR
Sbjct: 118 ---SPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSR 174

Query: 199 L 199
           +
Sbjct: 175 I 175