Pairwise Alignments

Query, 221 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 182 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 69.7 bits (169), Expect = 3e-17
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 18/186 (9%)

Query: 25  MLAYAQGDAAAFDVLYARHEGGLFRFVKRLLGARLAAQADEVFQDTWVRIISARDSFSPQ 84
           +LA AQGD  A   LY  HEG     V R + AR  A A+++  D  +RI +   S+ P 
Sbjct: 14  LLACAQGDRRALQALYD-HEGARLLGVARRI-ARDDATAEDIVHDAIIRIWTRAASYDPA 71

Query: 85  GATWRTWAFTIAHNLAMDRLRVSGREVALDAHPDNDSDPVPTLDRGVRGAVDAAAHPSAE 144
             + R W ++I  +LA++ +R + RE  L    D D++   TL            H   +
Sbjct: 72  RGSARGWIYSITRHLALNSIRDTRRETVL---TDADTETASTL------------HGRVD 116

Query: 145 ELAFWRAAGRRLLACLDELPTDQRAAFLLHHEDGLTVEALAASLEIGFETVRSRLRYGLQ 204
           +L  W +   ++  CL++L    +   L  + DG +   +A  L     TV++ ++  L+
Sbjct: 117 DLDLW-SGSAKIYRCLEQLQPAPQRCILHAYVDGCSHAEIAGLLGAPLGTVKAWIKRSLK 175

Query: 205 KLRGCM 210
            LR C+
Sbjct: 176 ALRECL 181