Pairwise Alignments

Query, 221 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 177 a.a., Sigma-K factor from Alteromonas macleodii MIT1002

 Score = 59.3 bits (142), Expect = 4e-14
 Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 24  LMLAYAQGDAAAFDVLYARHEGGLFRFVKRLLGARLAAQADEVFQDTWVRIISARDSFSP 83
           L+   A GD  AF  LY      L+    RLL  +    ADE  QD +++I     ++  
Sbjct: 9   LLCKTADGDKKAFAELYKITSPQLYAVALRLL--KRPELADEATQDAYIKIWHNAGNYQR 66

Query: 84  QGATWRTWAFTIAHNLAMDRLRVSG--REVALDAHPDNDSDPVPTLDRGVRGAVDAAAHP 141
              T  TW  +IA   A+D +R      EV L     ND               DA +  
Sbjct: 67  GKGTVLTWMVSIARYRALDLIRYHNVRNEVEL-----ND---------------DAPSGM 106

Query: 142 SAEELAFWRAAGRRLLACLDELPTDQRAAFLLHHEDGLTVEALAASLEIGFETVRSRLRY 201
              +     A   +L +CLDEL   QR A  L + +G++ + +   L     T++S +R 
Sbjct: 107 ETTQSIKLEAEQAKLASCLDELDGPQRQAIHLAYVNGMSHQEVVTHLASPLGTIKSWIRR 166

Query: 202 GLQKLRGCMA 211
           GLQ L+ C++
Sbjct: 167 GLQSLQRCLS 176