Pairwise Alignments

Query, 519 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 548 a.a., AMP-binding domain protein from Pseudomonas putida KT2440

 Score =  233 bits (593), Expect = 2e-65
 Identities = 164/511 (32%), Positives = 244/511 (47%), Gaps = 29/511 (5%)

Query: 19  AVVCGDTRLDFAGFTDRVARLGAVLRQLGMRPGDRVGMMSLNSHRFVEYFFGTWWGGGVI 78
           AV+ G  R  +    +R   L + L ++G++PG+RV +++ N    +E  +G    G V+
Sbjct: 38  AVIYGARRYSYRQLHERSRALASALERVGVQPGERVAILAPNIPEMLEAHYGVPGAGAVL 97

Query: 79  NPVNIRWNPKEVAYSLDDCDTRILLVDDVFAPMAAELRGLSSSLRTVVYCGDGAVPEGMV 138
             +NIR   + +A+ L  C  ++L+ D  F  +A +   +  +   +V   D       +
Sbjct: 98  VCINIRLEGRSIAFILRHCAAKVLICDREFGAVANQALAMLDAPPLLVGIDDDQAERADL 157

Query: 139 G----YEALLAATDPAE--DAPHDSDELAAVMYTGGTTGQPKGVMLTHGSLCINALGTVA 192
                YEA LA  DPA    AP +  +  A+ YT GTTG PKGV+L H    +NA     
Sbjct: 158 AHDLDYEAFLAQGDPARPLSAPQNEWQSIAINYTSGTTGDPKGVVLHHRGAYLNACAGAL 217

Query: 193 ALPRDTQDAAAIVAAPMFHVAGCG----VALQSLMRLVPVHVVPVFDELAVLRTLQSARI 248
                 + +  +   PMFH  G      V L     +    V P     A+   +    +
Sbjct: 218 IFQLGPR-SVYLWTLPMFHCNGWSHTWAVTLSGGTHVCLRKVQPD----AINAAIAEHAV 272

Query: 249 TEMFLVPTMIKRVIEHPRFAEFDLSSLRLLSYGAAPIDAALLDQAMRAFPGTAFAQVYGM 308
           T +   P ++  +I H   A      + +++ GAAP  A +     R F  T     YGM
Sbjct: 273 THLSAAPVVMSMLI-HAEHASAPPVPVSVITGGAAPPSAVIAAMEARGFNIT---HAYGM 328

Query: 309 TE-LSPVVTAL--PSHCHAPGPDRERLLRSAGTPIPIAELRIVDGDDNEVPFGQ----VG 361
           TE   P    L  P     P   R + +   G   P+ E   V   D   P       +G
Sbjct: 329 TESYGPSTLCLWQPGVDELPLEARAQFMSRQGVAHPLLEEATVLDTDTGRPVPADGLTLG 388

Query: 362 EIVARGPMVMKGYWNKPKETEAALRGGWMHTGDGGYMDEEGFVFVVDRMKDMIVSGGENV 421
           E+V RG  VMKGY + P+ T AAL  GW+HTGD   +  +G+V + DR KD+I+SGGEN+
Sbjct: 389 ELVVRGNTVMKGYLHNPEATRAALANGWLHTGDLAVLHLDGYVEIKDRAKDIIISGGENI 448

Query: 422 YSAEVENAIAQLPQVLMSAVIGVPDDKWGERVHAVIVRREGMALEAEAVIAHCREQIAGY 481
            S E+E  + Q P+V+ +AV+  PD +WGE  HA +  R       + ++  CRE++A +
Sbjct: 449 SSLEIEEVLYQHPEVVEAAVVARPDSRWGETPHAFVTLRADALASGDDLVRWCRERLAHF 508

Query: 482 KCPRSVEFRDALPLSAAGKLQKFQLREPFWA 512
           K PR V   D LP +A GK+QKF LRE  WA
Sbjct: 509 KAPRHVSLVD-LPKTATGKIQKFVLRE--WA 536