Pairwise Alignments

Query, 474 a.a., Uncharacterized MFS-type transporter from Variovorax sp. SCN45

Subject, 511 a.a., multidrug efflux transport system - permease subunit from Pseudomonas putida KT2440

 Score =  161 bits (407), Expect = 6e-44
 Identities = 117/399 (29%), Positives = 192/399 (48%), Gaps = 11/399 (2%)

Query: 20  VAVGFFMQTLDATIINTALPAMAASLGESPLRMQSVVVAYALTMAMLIPASGWIADRFGT 79
           +++  FMQ LD TI N ALP ++ +LG S  +   V+ ++A++ A+ +P +GW++ RFG 
Sbjct: 21  LSLATFMQVLDTTIANVALPTISGNLGVSYEQGTWVITSFAVSNAIALPLTGWLSRRFGE 80

Query: 80  RRIFFSAIVLFALGSVLCALSHSLGQLVAARVVQGLGGALLLPVGRLSLLRTVPRGEFLQ 139
            ++F  A +LF L S LC ++ S+ +LV  RV+QG+    L P+ +  L+   P  +   
Sbjct: 81  VKLFIWATLLFVLASFLCGIAQSMPELVGFRVLQGVVAGPLYPMTQTLLIAVYPPAKRGM 140

Query: 140 AMSFVAIPGLIGPLLGPTLGGWLVQYASWHWIFLINVPVGLAGCLATLKYMPDLRGVVQK 199
           A++ +A+  ++ P+ GP LGGW+    SW WIF INVP+GL    A ++     R VV  
Sbjct: 141 ALALLAMVTVVAPIAGPILGGWITDSYSWPWIFFINVPIGLFAA-AVVRQQMRTRPVVTS 199

Query: 200 R--FDSVGYAMLAFGMVAISLSLDGVG----LRQGGVMVVLIFGFASIAAYWLRASRTPE 253
           R   D +G   L  G+ A+ + LD            ++V  +     +A + +       
Sbjct: 200 RQPMDYIGLLTLIIGVGALQVVLDKGNDLDWFESSFIIVGSLISVVFLAVFVIWELTDRH 259

Query: 254 PLFAPSLFHVPTLSIGLIGNLFSRLGSSCMPFLVPLLLQVSMGYSPVRAGLMMLPIALAG 313
           P+    LF      IG I  +    G   +  ++P  LQ  MGY+   AGL + PI L  
Sbjct: 260 PVVNLRLFVHRNFRIGTIVLVGGYAGFFGINLILPQWLQTQMGYTATWAGLAVAPIGLLP 319

Query: 314 MAMKRFATPLITRHGYRRVLVVNTALVG--CTMASFGLTAPGQPMVLHVLQLLAFGAVNS 371
           + M  F      R   R +  +    +G  C M + G T+      + ++QL   G   +
Sbjct: 320 VIMSPFVGKYAHRFDLRVLAGLAFLAIGTSCYMRA-GFTSEVDFQHVALVQLF-MGIGVA 377

Query: 372 LQFTAMNTITLKDLDGSMASSGNSLLSMVQMLAMSMGVA 410
           L F    +I L DL     + G+ L + ++ L  S   +
Sbjct: 378 LFFMPTLSILLSDLPPHQIADGSGLATFLRTLGGSFAAS 416