Pairwise Alignments

Query, 416 a.a., Putative drug efflux protein from Variovorax sp. SCN45

Subject, 410 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 83/304 (27%), Positives = 131/304 (43%), Gaps = 30/304 (9%)

Query: 84  GSLSDHIGRRPVVLGALALQAVAMGLFLLAQDIGGLIVARVVQGIAT----GVASGALSA 139
           G LSD IGRRPV+L  +    V     LLAQ+I    + R +QGI+      V   A+  
Sbjct: 73  GPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLCFIGAVGYAAIQE 132

Query: 140 AVVEAAPASRKRLGALITSVSPLAGLALGALLTGMAVKFSVQPVMLVFGVLAVVFALGAA 199
           +  EA       L A +  ++PL G  +GA    +      + + ++F  LA +   G  
Sbjct: 133 SFEEAVCIKITALMANVALIAPLLGPLVGAAWIHV---LPWEGMFVLFAALAAISFFGLQ 189

Query: 200 VVLWMPETVTRRPGAWASLVPRVSIPARAR-AEFARGLPVFIA-VWALGGLFLSL----A 253
               MPET TR       +  ++S+    R  +       F+A   ALG + L L    A
Sbjct: 190 RA--MPETATR-------IGEKLSLKELGRDYKLVLKNGRFVAGALALGFVSLPLLAWIA 240

Query: 254 PSLMLHVFGVD-NGVVNGLTVAVLSGVGAIAPTLLGRLAAPRPA----IVGMASIAAGLV 308
            S ++ + G   +    GL    + G       LL RL + R      I+G   I  GL+
Sbjct: 241 QSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRTVRSLIIMGGWPIMIGLL 300

Query: 309 LLLASLATRSLALFFV--GTAVAGVGFGGAFSALVQTLAPLAQSHERGELFAAIFVVSYL 366
           +  A+    S A  ++  G ++   G G A + LV+ L   A    +G + AA+ ++  L
Sbjct: 301 VAAAATVISSHAYLWMTAGLSIYAFGIGLANAGLVR-LTLFASDMSKGTVSAAMGMLQML 359

Query: 367 AFSL 370
            F++
Sbjct: 360 IFTV 363