Pairwise Alignments
Query, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Subject, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440
Score = 471 bits (1212), Expect = e-136
Identities = 260/567 (45%), Positives = 357/567 (62%), Gaps = 39/567 (6%)
Query: 1376 CPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLA----LTGREA 1431
CP C+G RL A AV+F G+ I EL+ +S+ + + F +A LT ++
Sbjct: 283 CPLCQGKRLKREALAVTFA--------GLDIAELSHLSLQALAEVFRKVAAADYLTQQQD 334
Query: 1432 EI-------ARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQ 1484
E+ A+ + E+ R++ L ++GLGYL L+R PTLS GE QR+RLA QL S L
Sbjct: 335 ELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPTLSSGELQRLRLATQLNSQLF 394
Query: 1485 GVCYVLDEPTIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGK 1544
GV YVLDEP+ GLH D++ L AL +L + GN++ VVEHD DT+RRAD ++D+GP+AG+
Sbjct: 395 GVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGE 454
Query: 1545 RGGRLVAEGTVADIQNAGDSQTGRYLRDAIRHPLQARRSIPSPDPQAEDNGEWLTVHGAD 1604
GG ++ G A + S T YL DA P+QA R+ QA D WL + G
Sbjct: 455 HGGTILYSGPPAGLAEVQQSCTRTYLFDA---PVQATRA----PRQARD---WLKLEGIT 504
Query: 1605 LHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGRDADAAGKR 1664
+NL +L+A PL VTG+SGSGKS+L LL V + ++ +A +
Sbjct: 505 RNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPEAQSLEDE 564
Query: 1665 PAWAGCRKVD-GYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKARGY 1723
P V G +I R+++VDQ PIG+TPRS ATY G +D +RK FA T +AKA+G+
Sbjct: 565 PEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFAATEQAKAQGF 624
Query: 1724 GPARFSFNTGEGRCPGCEGAGVRTIEMSFLPDVKVPCEVCHGARFNPETLAVSWRGKSIG 1783
RFSFN +GRC CEG G ++E+ F+P V PC C GAR+NPETLAVSW+G +I
Sbjct: 625 DAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPETLAVSWQGMNIA 684
Query: 1784 DVLKMEVDEAVEFFASMPNIAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSK 1843
VL++ VD+A++ FA P LQ+L+D+GLGYL LGQP+ LSGGEAQRIKL TEL +
Sbjct: 685 QVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQR 744
Query: 1844 VRDDITRRGQKAPHTLYVLDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAE 1903
+ RG TLYVLDEPT GLH D+++L+ L+RLV GHSVVV+EHD+ ++A+
Sbjct: 745 M-----ARGA----TLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQ 795
Query: 1904 ADWIIDLGPEGGNAGGRIVAAAPPEEV 1930
+DW+ID+GP G+AGG++V + P+ V
Sbjct: 796 SDWVIDIGPGAGDAGGKVVVSGTPQVV 822
Score = 407 bits (1045), Expect = e-117
Identities = 274/796 (34%), Positives = 385/796 (48%), Gaps = 121/796 (15%)
Query: 251 GLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVIPNDKLTLRAGAIKT 310
G + P + YA+ FS N+ GAC C G GRV V ++P+ LT+R A+
Sbjct: 124 GHYPPGQAMLYAED----FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVA- 178
Query: 311 IQTPAWKEAQD--DLMRHAETAGIPRDTPWNKLTDEQKHWVI--EGTPNYK--------- 357
AW A +L T G D PW L Q+ W++ E TP
Sbjct: 179 ----AWPMAWQGQNLRDILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQ 234
Query: 358 ---------EGNWNKQWYGVRRFFAYLESKAYKMHIRVLLSKYRSYTQCPTCSGARLKLD 408
E ++ + G RR+ + + +R +++Y + CP C G RL
Sbjct: 235 TREALKRKLEPSYQGTFMGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRL--- 291
Query: 409 SLIWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLEALPGLCLHDLMLLPIERLRKFFDRM 468
K +A AV GL + +L L ++ L + F ++
Sbjct: 292 --------KREALAV--------------------TFAGLDIAELSHLSLQALAEVFRKV 323
Query: 469 GQGMAPSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALKLLFEEITTRLRY 528
AA++ L A Q A+ E+ R+
Sbjct: 324 -------------------AAADYLTQQQDELTLEKRLAAQRIAK-------ELLERIDT 357
Query: 529 LHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMNRITE 588
L D+G+GYL L+R + TLS GE+QR+ L T L + L ++VLDEPS GLHP D + E
Sbjct: 358 LLDLGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFE 417
Query: 589 AMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGTTDQLRDA-DTLTG 647
A+ RL+ AGN++ VVEHD M AD ++D+GP G GG I++ G L + + T
Sbjct: 418 ALQRLKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTR 477
Query: 648 QYLGGRKKIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTL 707
YL + R + L LEG+ +NL N++ FPL VTG+SGSGKS+L
Sbjct: 478 TYLFDAP---VQATRAPRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSL 534
Query: 708 IQDVLAPALMRHFGKATETPGAHDRML--------------GADHLGDVVFVDQSPIGKT 753
+ L + H G A + + L G + +V VDQ PIG+T
Sbjct: 535 VSQALLELVGAHLGHAEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRT 594
Query: 754 ARSNPASYVGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFL 813
RSN A+Y G +D +R+ FA ++ +G+ A +FSFN GRC C G GF VE+ F+
Sbjct: 595 PRSNLATYTGLFDHVRKCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFM 654
Query: 814 SDVYLRCPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQP 873
VY CP C G RY PE L V + N+A VL LTV +A VF R LQ
Sbjct: 655 PSVYAPCPTCQGARYNPETLAV----SWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQV 710
Query: 874 ISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTT 933
+ D+GL Y++LGQP LSGGEAQR+KLA L A+GA TL++ DEPT
Sbjct: 711 LQDIGLGYLRLGQPATELSGGEAQRIKLATELQRMARGA-----------TLYVLDEPTN 759
Query: 934 GLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTP 993
GLH DI RL+ L +L+E+GHS++V+EH++ V+ SDW+ID+GP G+ GG+VV GTP
Sbjct: 760 GLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQSDWVIDIGPGAGDAGGKVVVSGTP 819
Query: 994 EQLRENRASLTGAALA 1009
+ + S T LA
Sbjct: 820 QVVAACTDSRTATFLA 835
Score = 138 bits (348), Expect = 3e-36
Identities = 97/286 (33%), Positives = 139/286 (48%), Gaps = 50/286 (17%)
Query: 820 CPDCDGKRYRPEILEV-------------------RVERK--GKSYNVADVLDLTVAEAA 858
CP C GKR + E L V V RK Y +LT+ +
Sbjct: 283 CPLCQGKRLKREALAVTFAGLDIAELSHLSLQALAEVFRKVAAADYLTQQQDELTLEKRL 342
Query: 859 AVFEADRDVLRVLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQS 918
A +++L + + D+GL Y+ L + PTLS GE QRL+LA ++ +
Sbjct: 343 AAQRIAKELLERIDTLLDLGLGYLALERSTPTLSSGELQRLRLA------------TQLN 390
Query: 919 VARKGTLFLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGP 978
G +++ DEP+ GLH D L AL++L +AG+S+ V+EH+LD +R +DWL+D+GP
Sbjct: 391 SQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHDLDTMRRADWLVDVGP 450
Query: 979 EGGEGGGQVVAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAP 1038
GE GG ++ G P L E + S T L DA A RA R+
Sbjct: 451 AAGEHGGTILYSGPPAGLAEVQQSCTRTYLF--------DAPVQATRAPRQ--------- 493
Query: 1039 GSDAVQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDIL 1084
D +++ +NL NLS P G F+ VTG+SGSGKS+L L
Sbjct: 494 ARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQAL 539
Score = 134 bits (337), Expect = 5e-35
Identities = 98/283 (34%), Positives = 140/283 (49%), Gaps = 55/283 (19%)
Query: 1298 VFSTLRACPVCSTSYAE---LDPRLFSYNSKHGWCPDCVGTGVKLSKDQRKVFDDSVRDD 1354
+F +R C +T A+ D FS+N G C +C G G
Sbjct: 605 LFDHVRKC-FAATEQAKAQGFDAGRFSFNVAKGRCANCEGEG------------------ 645
Query: 1355 DNKGREQTFAEPEVEDLADV--ACPTCEGTRLNATARAVSFGASLANGSGGIGITELARM 1412
F E+ + V CPTC+G R N AVS+ G+ I ++ ++
Sbjct: 646 --------FVSVELLFMPSVYAPCPTCQGARYNPETLAVSWQ--------GMNIAQVLQL 689
Query: 1413 SVTEVRQWFEGLALTGREAEIARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQR 1472
+V + Q F AE P + L+ L+++GLGYL L + A LSGGEAQR
Sbjct: 690 TVDQALQVF---------AE-----QPPARRCLQVLQDIGLGYLRLGQPATELSGGEAQR 735
Query: 1473 IRLAAQLGSNLQGVC-YVLDEPTIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRR 1531
I+LA +L +G YVLDEPT GLH +D LL L++L E G+++VVVEHD + +
Sbjct: 736 IKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQ 795
Query: 1532 ADHIIDIGPSAGKRGGRLVAEGTVADIQNAGDSQTGRYLRDAI 1574
+D +IDIGP AG GG++V GT + DS+T +L A+
Sbjct: 796 SDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
Score = 128 bits (322), Expect = 3e-33
Identities = 62/133 (46%), Positives = 92/133 (69%)
Query: 4 GSIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYA 63
G IR+RGAR+HNL+N+D+DI + V TG SGSGKSSL F TLYAE QRRY E+ + YA
Sbjct: 10 GFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYA 69
Query: 64 RQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDR 123
R+ +D++ P VD ++G+PPA+A+ Q S+RS+VG++T L+ +++L++RA
Sbjct: 70 RRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAGHYPPG 129
Query: 124 ETALPVRHDSPDS 136
+ L SP++
Sbjct: 130 QAMLYAEDFSPNT 142
Score = 117 bits (293), Expect = 7e-30
Identities = 57/116 (49%), Positives = 79/116 (68%)
Query: 1040 SDAVQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAY 1099
S +++ AREHNLKN+ VDIPR V TGVSGSGKS+LAF L+ E QRRY ES+ Y
Sbjct: 9 SGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPY 68
Query: 1100 ARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLG 1155
AR ++ G P+VDA+ G+PP VA++Q+ +S+VG+ T + +R+LY + G
Sbjct: 69 ARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
Score = 65.1 bits (157), Expect = 4e-14
Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 673 LEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQDVL-APALMRHFGKATETPGAHD 731
+ G REHNLKNI VD P LV TGVSGSGKS+L L A A R+F E+ +
Sbjct: 14 VRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYF----ESVAPYA 69
Query: 732 RML----------GADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFATAA--LSR 779
R L D L V + Q +ARS+ S +IR +++ A
Sbjct: 70 RRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAGHYPPG 129
Query: 780 QRGYTASKFSFNSGDGRCPTCGGSG--FEHVEMQFLSD 815
Q A FS N+ G CP C G G +E E + D
Sbjct: 130 QAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
Score = 64.7 bits (156), Expect = 5e-14
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 25/199 (12%)
Query: 1597 WLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGR 1656
++ V GA HNL+++ +P LVV TGVSGSGKS+LA L A Q + +
Sbjct: 11 FIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESV----- 65
Query: 1657 DADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTL 1716
A A + G VD + + + + Q + RS + +IR L++
Sbjct: 66 -APYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYS--- 121
Query: 1717 EAKARGYGPAR-------FSFNTGEGRCPGCEGAG--VRTIEMSFLPDVKVPCEVCHGAR 1767
+A Y P + FS NT +G CP C G G E + +PD + A
Sbjct: 122 --RAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAA 179
Query: 1768 FNPETLAVSWRGKSIGDVL 1786
+ ++W+G+++ D+L
Sbjct: 180 W-----PMAWQGQNLRDIL 193
Score = 46.6 bits (109), Expect = 1e-08
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTL--YAEGQRRYVETFSAYA 63
+++ G ++NL NL G T VTG SGSGKSSLV L + E S
Sbjct: 498 LKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPE 557
Query: 64 RQFLDRMDKPAVDK-------VEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFA 115
Q L+ D+P + + + +DQ R+ RS + T T L DH++ FA
Sbjct: 558 AQSLE--DEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614