Pairwise Alignments
Query, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Subject, 944 a.a., excinuclease (uvrABC system protein A) from Pseudomonas putida KT2440
Score = 654 bits (1688), Expect = 0.0
Identities = 398/976 (40%), Positives = 556/976 (56%), Gaps = 105/976 (10%)
Query: 1041 DAVQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYA 1100
D + I AR HNLKN+ + +PR K V+TG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 2 DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 1101 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCI 1160
R + +P+VD + G+ P ++IEQ+ + +STVGT TE++ +LRLLY ++G C
Sbjct: 62 RQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCP 121
Query: 1161 HDGAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVYTELADWARPRGFTHLRVDG 1220
++ QT + ++ +G + LLAP+V RKG + + D R +GF RV+G
Sbjct: 122 DHDIPLEAQTISQMVDLVLERPEGSKLMLLAPVVRERKGEHLAVFDELRAQGFVRARVNG 181
Query: 1221 DFLPTTGFPRIDRFKEHSIELPVASLDV--------LPSKETELREALTKAL------EH 1266
P++D+ K+HSI++ V V S ET L+ A AL E
Sbjct: 182 KLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDEQ 241
Query: 1267 GKGVV-----------HVLSELDGLRAAMMAGVSAA----GIGRVHVFSTLRAC----PV 1307
G+ + H +SEL+ + A G+G F T R +
Sbjct: 242 GEETIFSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLVNTELTL 301
Query: 1308 CSTSYAELDPRLFSYNSKHGWCPDCVGTGVK-----LSKDQRKV---------------- 1346
+ D R Y G G ++ LS + +KV
Sbjct: 302 AEGAIRGWDRRNVYYFQMLGSLAAHYGFSLEEPFGELSAEHQKVILQGSGKQSVDFKYLN 361
Query: 1347 -----------FDDSVRDDDNKGREQ---TFAEPEVEDLADVACPTCEGTRLNATARAVS 1392
F+ V + + + RE T E + L CP C GTRL AR V
Sbjct: 362 DRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRREARHVW 421
Query: 1393 FGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIARDLVPEIKSRLEFLEEVG 1452
G + + + + E +F L LTGR EIA ++ EI RL+FL VG
Sbjct: 422 VGEKT--------LPAVTNLPIGEASNYFGQLTLTGRRGEIAAKILKEICERLQFLVNVG 473
Query: 1453 LGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHARDNQILLNALHKL 1512
L YLTLDR A TLSGGEAQRIRLA+Q+G+ L GV Y+LDEP+IGLH RDN LL L+ L
Sbjct: 474 LDYLTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHL 533
Query: 1513 GEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEGTVADIQNAGDSQTGRYLRD 1572
+ GNT++VVEHDED IR AD+++DIGP AG GG++VAEG+ ++ + DS TG+YL
Sbjct: 534 RDLGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSG 593
Query: 1573 AIRHPLQARRSIPSPDPQAEDNGEWLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKS 1632
+ + A+R+ + Q L + GA +NLQ++ +P+ L VTGVSGSGKS
Sbjct: 594 RKKIVVPAKRTPRNKKLQ-------LKLKGARGNNLQNVDLEVPIGLLTCVTGVSGSGKS 646
Query: 1633 TLARDVLLASVQGIVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGK 1692
TL + L A + A A A +DG + +D+V+++DQ+PIG+
Sbjct: 647 TLINNTLYPL-----------AATALNGASSLEA-APHSSMDGLQHLDKVVDIDQSPIGR 694
Query: 1693 TPRSCPATYIGFWDTIRKLFADTLEAKARGYGPARFSFNTGEGRCPGCEGAGVRTIEMSF 1752
TPRS PATY G + IR+LF+ E+++RGYGP RFSFN GRC C+G G+ +EM F
Sbjct: 695 TPRSNPATYTGIFTPIRELFSGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHF 754
Query: 1753 LPDVKVPCEVCHGARFNPETLAVSWRGKSIGDVLKMEVDEAVEFFASMPNIAHPLQLLKD 1812
LPD+ VPC+VC R+N ETL + ++GK+I +VL+M +++A EFF ++P +A LQ L D
Sbjct: 755 LPDIYVPCDVCKSKRYNRETLEIKYKGKNIHEVLEMTIEDAREFFDAVPALARKLQTLMD 814
Query: 1813 VGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLYVLDEPTVGLHMA 1872
VGL Y+ LGQ + TLSGGEAQR+KL ELSK + TLY+LDEPT GLH A
Sbjct: 815 VGLSYIKLGQSATTLSGGEAQRVKLSRELSK---------RDTGKTLYILDEPTTGLHFA 865
Query: 1873 DVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGRIVAAAPPEEVVR 1932
D+++L+ VLHRL + G++VVVIEH+LD+I ADW++DLGPEGG+ GG+I+A PEE+
Sbjct: 866 DIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIACGTPEELSE 925
Query: 1933 L-GTHTGVALAPVLAR 1947
+ ++TG L P+L R
Sbjct: 926 MKQSYTGHYLKPLLER 941
Score = 632 bits (1629), Expect = 0.0
Identities = 405/1024 (39%), Positives = 553/1024 (54%), Gaps = 119/1024 (11%)
Query: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I IRGAR HNL+N+DL + ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDRET 125
FL M+KP VD +EG+ PAI+I+Q + + RSTVGT+TE+ D+L+LL+AR +
Sbjct: 64 FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDH 123
Query: 126 ALPVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPASTTAEEVTQWLSASGFTRVQSE 185
+P+ + + + ER + +L++ PV V L A GF R +
Sbjct: 124 DIPLEAQTISQMVDLVLERPEGS---KLMLLAPVVRERKGEHLAVFDELRAQGFVRARVN 180
Query: 186 REVATPTGPRKV-------LDVVADRFRASSAERSRVVEAIEVALKRGSGRVTVHATGAE 238
++ K+ +DVV DRF+ + + R+ E+ E ALK G V E
Sbjct: 181 GKLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240
Query: 239 ENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVIPN 298
+ T FS CP ++ P +FSFN+ GAC TC G G D ++ N
Sbjct: 241 QGEETI---FSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-N 296
Query: 299 DKLTLRAGAIKTIQTPAWKEAQ----DDLMRHAETAGIPRDTPWNKLTDEQKHWVIEGTP 354
+LTL GAI+ W L A G + P+ +L+ E + +++G+
Sbjct: 297 TELTLAEGAIR-----GWDRRNVYYFQMLGSLAAHYGFSLEEPFGELSAEHQKVILQGSG 351
Query: 355 NYK--------EGNWNKQWYGVRRFFAYLESKAYKMH---IRVLLSKYRSYTQCPTCSGA 403
G+ K+ + LE + + +R L+K+ CP C G
Sbjct: 352 KQSVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGT 411
Query: 404 RLKLDSLIWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLEALPGLCLHDLMLLPIERLRK 463
R L E R + G K LP + LPI
Sbjct: 412 R-------------------LRREARHVWVGEK-------TLPAVTN-----LPIGEASN 440
Query: 464 FFDRMGQGMAPSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALKLLFEEIT 523
+F GQ L R+GE A + +EI
Sbjct: 441 YF--------------GQLTLTG---------------------RRGEIAAK--ILKEIC 463
Query: 524 TRLRYLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDM 583
RL++L +VG+ YLTLDR + TLSGGE QRI L + +G LV +++LDEPSIGLH RD
Sbjct: 464 ERLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDN 523
Query: 584 NRITEAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGTTDQLRD-A 642
+R+ + LRD GNT++VVEHD + AD V+D+GPG G GGQIV +G+ ++ D
Sbjct: 524 DRLLATLNHLRDLGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHP 583
Query: 643 DTLTGQYLGGRKKIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGS 702
D+LTG+YL GRKKI + KR +L L+G R +NL+N+ ++ P+ L CVTGVSGS
Sbjct: 584 DSLTGKYLSGRKKIVVPAKRTPRNKKLQLKLKGARGNNLQNVDLEVPIGLLTCVTGVSGS 643
Query: 703 GKSTLIQDVLAPALMRHFGKATETPGA-HDRMLGADHLGDVVFVDQSPIGKTARSNPASY 761
GKSTLI + L P A+ A H M G HL VV +DQSPIG+T RSNPA+Y
Sbjct: 644 GKSTLINNTLYPLAATALNGASSLEAAPHSSMDGLQHLDKVVDIDQSPIGRTPRSNPATY 703
Query: 762 VGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCP 821
G + IRE+F+ SR RGY +FSFN GRC C G G VEM FL D+Y+ C
Sbjct: 704 TGIFTPIRELFSGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCD 763
Query: 822 DCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDVGLDY 881
C KRY E LE++ KGK N+ +VL++T+ +A F+A + R LQ + DVGL Y
Sbjct: 764 VCKSKRYNRETLEIKY--KGK--NIHEVLEMTIEDAREFFDAVPALARKLQTLMDVGLSY 819
Query: 882 VKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTGLHFDDIA 941
+KLGQ TLSGGEAQR+KL+ L++ G TL++ DEPTTGLHF DI
Sbjct: 820 IKLGQSATTLSGGEAQRVKLSRELSKRDTGK-----------TLYILDEPTTGLHFADIQ 868
Query: 942 RLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPEQLRENRA 1001
+L+ L +L + G++++VIEHNLDVI+ +DWL+DLGPEGG GGQ++A GTPE+L E +
Sbjct: 869 QLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIACGTPEELSEMKQ 928
Query: 1002 SLTG 1005
S TG
Sbjct: 929 SYTG 932
Score = 160 bits (406), Expect = 6e-43
Identities = 110/344 (31%), Positives = 175/344 (50%), Gaps = 46/344 (13%)
Query: 820 CPDCDGKRYRPEILEVRVERK----------GKSYNVADVLDLTVAEAAAVFEADRDVLR 869
CPDC G R R E V V K G++ N L LT + +++
Sbjct: 405 CPDCRGTRLRREARHVWVGEKTLPAVTNLPIGEASNYFGQLTLTGRRGEIAAKILKEICE 464
Query: 870 VLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFD 929
LQ + +VGLDY+ L + TLSGGEAQR++LA S+ G +++ D
Sbjct: 465 RLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLA------------SQIGAGLVGVMYILD 512
Query: 930 EPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVA 989
EP+ GLH D RL+ L L + G+++IV+EH+ D IR +D+++D+GP G GGQ+VA
Sbjct: 513 EPSIGLHQRDNDRLLATLNHLRDLGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGQIVA 572
Query: 990 EGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPGSDAVQ--IVN 1047
EG+P+++ ++ SLTG L+ ++ + AK+ P + +Q +
Sbjct: 573 EGSPQEVMDHPDSLTGKYLS----------------GRKKIVVPAKRTPRNKKLQLKLKG 616
Query: 1048 AREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQPA 1107
AR +NL+N+ +++P G + VTGVSGSGKSTL + L+ L + S ++ A
Sbjct: 617 ARGNNLQNVDLEVPIGLLTCVTGVSGSGKSTLINNTLYP------LAATALNGASSLEAA 670
Query: 1108 GRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLY 1151
+D + + V I+Q +S T T ++ +R L+
Sbjct: 671 PHSSMDGLQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELF 714
Score = 53.5 bits (127), Expect = 1e-10
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 670 RLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQDVL-----------APALMR 718
++++ G R HNLKNI + P +L+ +TG+SGSGKS+L D L A R
Sbjct: 3 KILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
Query: 719 HFGKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFATAALS 778
F E P D + G L + ++Q RS + +D +R ++A
Sbjct: 63 QFLSMMEKPDV-DTIEG---LSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTP 118
Query: 779 R 779
R
Sbjct: 119 R 119