Pairwise Alignments
Query, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Subject, 941 a.a., excinuclease ABC subunit UvrA from Erwinia tracheiphila SCR3
Score = 662 bits (1707), Expect = 0.0
Identities = 403/977 (41%), Positives = 561/977 (57%), Gaps = 110/977 (11%)
Query: 1041 DAVQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYA 1100
D +++ AR HNLKN+++ IPR K VVTG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 2 DKIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 1101 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCI 1160
R + +P+VD + G+ P ++IEQ+ + +STVGT TE+ +LRLL+ ++G C
Sbjct: 62 RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCP 121
Query: 1161 HDGAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVYTELADWARPRGFTHLRVDG 1220
+ QT + ++ +G+ + LLAP++ RKG +++ + +G+ R+DG
Sbjct: 122 EHDVTLAAQTVSQMVDNVLALTEGRRLMLLAPIIKERKGEHSKTLENLASQGYIRARIDG 181
Query: 1221 DFLPTTGFPRIDRFKEHSIELPVASLDVLPSKETELREALTKALEHGKGVVHVLSELDGL 1280
+ + P+++ K+H+IE+ V V + L E+ ALE G V V++++D
Sbjct: 182 EVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGTV-VVADMDDT 240
Query: 1281 R----------AAMMAGVSAAGIG-RVHVFST-LRACPVCSTSYAE--LDPRLFSYNSK- 1325
A + G S + + R+ F+ AC C + DP N
Sbjct: 241 SAEELVFSANFACPVCGYSMSELEPRLFSFNNPAGACATCDGLGVQQYFDPERVVQNPDL 300
Query: 1326 -------HGW-----------CP-------DCVGTGVKLSKDQRKVF------------- 1347
GW C D + L RKV
Sbjct: 301 SLAGGAIRGWDRRNFYYFQMLCSLSEHLNFDIETPFISLDASTRKVILYGSGKENIEFKY 360
Query: 1348 -----DDSVRDDDNKG----REQTFAEPEV----EDLADV----ACPTCEGTRLNATARA 1390
D SVR +G E+ + E E EDLA AC +CEGTRL AR
Sbjct: 361 INDRGDTSVRRHPFEGVLHNMERRYKETESAAVREDLAKFISNRACASCEGTRLRREARH 420
Query: 1391 VSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIARDLVPEIKSRLEFLEE 1450
V + + ++ MS+ +F+ + L+G+ A+IA ++ EI RL+FL
Sbjct: 421 VFVENT--------NLPTISDMSIGHAMTFFQEMKLSGQRAKIAEKVLKEIGDRLKFLVN 472
Query: 1451 VGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHARDNQILLNALH 1510
VGL YL+L R A TLSGGEAQRIRLA+Q+G+ L GV YVLDEP+IGLH RDN+ LL L
Sbjct: 473 VGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLV 532
Query: 1511 KLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEGTVADIQNAGDSQTGRYL 1570
L GNT++VVEHDED IR ADH+IDIGP AG RGG++VAEGTV DI S TG++L
Sbjct: 533 HLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVRGGQVVAEGTVDDIMAVDASLTGQFL 592
Query: 1571 RDAIRHPLQARRSIPSPDPQAEDN-GEWLTVHGADLHNLQDLTATLPLHRLVVVTGVSGS 1629
+RSI P + + + L + GA +NL+D+T TLP+ +TGVSGS
Sbjct: 593 --------SGKRSIAVPQERVKAAPNKVLKLTGAKGNNLKDVTLTLPVGLFSCITGVSGS 644
Query: 1630 GKSTLARDVLLASVQGIVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLEVDQTP 1689
GKSTL D L + QR+ + A R + G E D+V+++DQ+P
Sbjct: 645 GKSTLINDTLFP-----IAQRLLNGATIIEPAPYRD-------ISGMEHFDKVIDIDQSP 692
Query: 1690 IGKTPRSCPATYIGFWDTIRKLFADTLEAKARGYGPARFSFNTGEGRCPGCEGAGVRTIE 1749
IG+TPRS PATY G + +R+LF+ E++ RGY P RFSFN GRC C+G GV +E
Sbjct: 693 IGRTPRSNPATYTGIFTPVRELFSGVPESRTRGYTPGRFSFNVRGGRCEACQGDGVIKVE 752
Query: 1750 MSFLPDVKVPCEVCHGARFNPETLAVSWRGKSIGDVLKMEVDEAVEFFASMPNIAHPLQL 1809
M FLPD+ VPC+ C G R+N ETL + ++GKSI +VL+M ++EA EFF ++P +A LQ
Sbjct: 753 MHFLPDIYVPCDQCKGKRYNRETLEIKYKGKSIHEVLEMTIEEAREFFDAVPALARKLQT 812
Query: 1810 LKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLYVLDEPTVGL 1869
+ DVGL Y+ LGQ + TLSGGEAQR+KL ELSK RG TLY+LDEPT GL
Sbjct: 813 MMDVGLSYIRLGQSATTLSGGEAQRVKLARELSK-------RG--TGQTLYILDEPTTGL 863
Query: 1870 HMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGRIVAAAPPEE 1929
H AD+++L+ VLH+L + G+++VVIEH+LD+I ADWI+DLGPEGG+ GG I+A+ PE
Sbjct: 864 HFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILASGTPET 923
Query: 1930 VVRL-GTHTGVALAPVL 1945
V + +HT L P+L
Sbjct: 924 VAKCKASHTARFLKPLL 940
Score = 543 bits (1399), Expect = e-158
Identities = 379/1034 (36%), Positives = 535/1034 (51%), Gaps = 132/1034 (12%)
Query: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I +RGAR HNL+N++L I ++ VVTG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 4 IEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDRET 125
FL M+KP VD +EG+ PAI+I+Q + + RSTVGT+TE++D+L+LLFAR E
Sbjct: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVG-----EP 118
Query: 126 ALPVRHD---SPDSIYAQIAERAAAAGDPRLVVTFPVELPASTTAEEVTQWLSASGFTRV 182
P HD + ++ + A RL++ P+ + + L++ G+ R
Sbjct: 119 RCP-EHDVTLAAQTVSQMVDNVLALTEGRRLMLLAPIIKERKGEHSKTLENLASQGYIRA 177
Query: 183 QSEREVATPTGPRKV-------LDVVADRFRASSAERSRVVEAIEVALKRGSGRVTV--- 232
+ + EV + P K+ ++VV DRF+ + R+ E+ E AL+ G V V
Sbjct: 178 RIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGTVVVADM 237
Query: 233 HATGAEENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDL 292
T AEE FS CP ++ P +FSFN+ GAC TC G G D
Sbjct: 238 DDTSAEELV------FSANFACPVCGYSMSELEPRLFSFNNPAGACATCDGLGVQQYFDP 291
Query: 293 GLVIPNDKLTLRAGAIKTIQTPAWKEAQ------DDLMRHAETAGIPRDTPWNKL----- 341
V+ N L+L GAI+ + Q + L ET I D K+
Sbjct: 292 ERVVQNPDLSLAGGAIRGWDRRNFYYFQMLCSLSEHLNFDIETPFISLDASTRKVILYGS 351
Query: 342 ---TDEQKHWVIEGTPNYKEGNWNKQWYGVRRFFAYLESKAYKMHIRVLLSKYRSYTQCP 398
E K+ G + + + + + R + ES A +R L+K+ S C
Sbjct: 352 GKENIEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESAA----VREDLAKFISNRACA 407
Query: 399 TCSGARLKLDSLIWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLEALPG--LCLHDLMLL 456
+C G RL+ ++ R E+ + P M G T Q L G + + +L
Sbjct: 408 SCEGTRLRREA---RHVFVENTNL---PTISDMSIGHAMTFFQEMKLSGQRAKIAEKVLK 461
Query: 457 PIERLRKFFDRMGQGMAPSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALK 516
I KF +G + +L + E GEAQ ++
Sbjct: 462 EIGDRLKFLVNVGLN-------------------------YLSLSRSAETLSGGEAQRIR 496
Query: 517 LLFEEITTRLRYLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSI 576
L +I L VG+ Y+ LD S L + +R+ T +L NT+ V++
Sbjct: 497 LA-SQIGAGL-----VGVMYV-LDEPSIGLHQRDNERLLETLVHLRNLGNTVIVVE---- 545
Query: 577 GLHPRDMNRITEAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGTT 636
HD + AAD VID+GPG G RGGQ+V +GT
Sbjct: 546 ----------------------------HDEDAIRAADHVIDIGPGAGVRGGQVVAEGTV 577
Query: 637 DQLRDAD-TLTGQYLGGRKKIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVC 695
D + D +LTGQ+L G++ I + +R+ + L L G + +NLK++T+ P+ C
Sbjct: 578 DDIMAVDASLTGQFLSGKRSIAVPQERVKAAPNKVLKLTGAKGNNLKDVTLTLPVGLFSC 637
Query: 696 VTGVSGSGKSTLIQDVLAPALMRHFGKAT-ETPGAHDRMLGADHLGDVVFVDQSPIGKTA 754
+TGVSGSGKSTLI D L P R AT P + + G +H V+ +DQSPIG+T
Sbjct: 638 ITGVSGSGKSTLINDTLFPIAQRLLNGATIIEPAPYRDISGMEHFDKVIDIDQSPIGRTP 697
Query: 755 RSNPASYVGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLS 814
RSNPA+Y G + +RE+F+ SR RGYT +FSFN GRC C G G VEM FL
Sbjct: 698 RSNPATYTGIFTPVRELFSGVPESRTRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLP 757
Query: 815 DVYLRCPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPI 874
D+Y+ C C GKRY E LE++ KGKS + +VL++T+ EA F+A + R LQ +
Sbjct: 758 DIYVPCDQCKGKRYNRETLEIKY--KGKS--IHEVLEMTIEEAREFFDAVPALARKLQTM 813
Query: 875 SDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTG 934
DVGL Y++LGQ TLSGGEAQR+KLA L++ G TL++ DEPTTG
Sbjct: 814 MDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQ-----------TLYILDEPTTG 862
Query: 935 LHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPE 994
LHF DI +L+ L +L + G++++VIEHNLDVI+ +DW++DLGPEGG GGG+++A GTPE
Sbjct: 863 LHFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILASGTPE 922
Query: 995 QLRENRASLTGAAL 1008
+ + +AS T L
Sbjct: 923 TVAKCKASHTARFL 936
Score = 157 bits (397), Expect = 6e-42
Identities = 117/346 (33%), Positives = 174/346 (50%), Gaps = 50/346 (14%)
Query: 820 CPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEA-------DRDVLRVLQ 872
C C+G R R E V VE N+ + D+++ A F+ + +VL+
Sbjct: 406 CASCEGTRLRREARHVFVENT----NLPTISDMSIGHAMTFFQEMKLSGQRAKIAEKVLK 461
Query: 873 PISD-------VGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTL 925
I D VGL+Y+ L + TLSGGEAQR++LA S+ G +
Sbjct: 462 EIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLA------------SQIGAGLVGVM 509
Query: 926 FLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGG 985
++ DEP+ GLH D RL+ L L G+++IV+EH+ D IRA+D +ID+GP G GG
Sbjct: 510 YVLDEPSIGLHQRDNERLLETLVHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVRGG 569
Query: 986 QVVAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPGSDAVQI 1045
QVVAEGT + + ASLTG L+ P ER KA + +++
Sbjct: 570 QVVAEGTVDDIMAVDASLTGQFLSGKRSIAVPQ-----ERV---------KAAPNKVLKL 615
Query: 1046 VNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQ 1105
A+ +NLK++++ +P G FS +TGVSGSGKSTL D LF QR LN +I++
Sbjct: 616 TGAKGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLFPIAQR----LLN--GATIIE 669
Query: 1106 PAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLY 1151
PA ++ + + I+Q +S T T ++ +R L+
Sbjct: 670 PAPYRDISGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELF 715
Score = 144 bits (363), Expect = 6e-38
Identities = 90/262 (34%), Positives = 129/262 (49%), Gaps = 51/262 (19%)
Query: 1317 PRLFSYNSKHGWCPDCVGTGVKLSKDQRKVFDDSVRDDDNKGREQTFAEPEVEDLAD--V 1374
P FS+N + G C C G GV + E+ L D V
Sbjct: 728 PGRFSFNVRGGRCEACQGDGV--------------------------IKVEMHFLPDIYV 761
Query: 1375 ACPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIA 1434
C C+G R N + + G I E+ M++ E R++F
Sbjct: 762 PCDQCKGKRYNRETLEIKYK--------GKSIHEVLEMTIEEAREFF------------- 800
Query: 1435 RDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQG-VCYVLDEP 1493
D VP + +L+ + +VGL Y+ L + A TLSGGEAQR++LA +L G Y+LDEP
Sbjct: 801 -DAVPALARKLQTMMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEP 859
Query: 1494 TIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEG 1553
T GLH D Q LL LH+L ++GNT+VV+EH+ D I+ AD I+D+GP G GG ++A G
Sbjct: 860 TTGLHFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILASG 919
Query: 1554 TVADIQNAGDSQTGRYLRDAIR 1575
T + S T R+L+ ++
Sbjct: 920 TPETVAKCKASHTARFLKPLLK 941
Score = 51.2 bits (121), Expect = 6e-10
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 670 RLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQDVLAPALMRHFGKATETPGA 729
++ + G R HNLKNI + P +L+ VTG+SGSGKS+L D L R + E+ A
Sbjct: 3 KIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRY---VESLSA 59
Query: 730 HDRML-------GADH---LGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFA 773
+ R DH L + ++Q RS + D +R +FA
Sbjct: 60 YARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFA 113