Pairwise Alignments
Query, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Subject, 943 a.a., excinuclease ABC subunit UvrA from Dickeya dianthicola ME23
Score = 657 bits (1696), Expect = 0.0
Identities = 404/977 (41%), Positives = 554/977 (56%), Gaps = 106/977 (10%)
Query: 1041 DAVQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYA 1100
D ++I AR HNLKN+++ IPR K VVTG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 2 DKIEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 1101 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCI 1160
R + +P+VD + G+ P ++IEQ+ + +STVGT TE+ +LRLL+ ++G C
Sbjct: 62 RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCP 121
Query: 1161 HDGAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVYTELADWARPRGFTHLRVDG 1220
+ QT + ++ +G+ + LLAP+V RKG +T+ + +G+ R+DG
Sbjct: 122 EHAIPLDAQTVSQMVDNVLSQPEGKRLMLLAPIVKERKGEHTKTLENLATQGYIRARIDG 181
Query: 1221 DFLPTTGFPRIDRFKEHSIELPVASLDVLPSKETELREALTKA--LEHGKGVVHVLSELD 1278
+ + P+++ K+H+I++ V V L E+ A L G VV + + +
Sbjct: 182 EVCDLSDPPKLELQKKHTIDVVVDRFKVRNDLAQRLAESFETALELSGGTAVVADMDDPN 241
Query: 1279 GLRAAMMAGVSAAGIG--------RVHVFST-LRACPVCSTSYAE--LDPRLFSYNSK-- 1325
A + G R+ F+ ACP C + DP N +
Sbjct: 242 APELLFSANFACPVCGYSMHELEPRLFSFNNPAGACPTCDGLGVQQFFDPARVVQNGELS 301
Query: 1326 ------HGWCP------------------DCVGTGVKLSKDQRKVF-------------- 1347
GW D LS +KV
Sbjct: 302 LAGGAIRGWDRRNFYYFQMLRSLAEHYQFDVEAPFDNLSPAVQKVILYGSGKENIEFKYI 361
Query: 1348 ----DDSVRDDDNKG----REQTFAEPEV----EDLADVA----CPTCEGTRLNATARAV 1391
D SVR +G E+ + E E E+LA C +C GTRL AR V
Sbjct: 362 NDRGDTSVRRHPFEGVLNNMERRYKETESTAVREELAKFISNRPCASCNGTRLREEARHV 421
Query: 1392 SFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIARDLVPEIKSRLEFLEEV 1451
+ + ++A MS+ +F + L+G+ A+IA ++ EI RL FL V
Sbjct: 422 YVEQTT--------LPQIADMSIGHAMAFFHNIKLSGQRAKIAEKVLKEIGDRLRFLVNV 473
Query: 1452 GLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHARDNQILLNALHK 1511
GL YL+L R A TLSGGEAQRIRLA+Q+G+ L GV YVLDEP+IGLH RDN+ LL L
Sbjct: 474 GLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIH 533
Query: 1512 LGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEGTVADIQNAGDSQTGRYLR 1571
L GNT++VVEHDED IR ADHIIDIGP AG GG+++AEGT A I +S TG++L
Sbjct: 534 LRNLGNTVIVVEHDEDAIRAADHIIDIGPGAGVHGGQVIAEGTAAQIMAEPESLTGQFLS 593
Query: 1572 DAIRHPLQARRSIPSPDPQAEDNGEWLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGK 1631
A + + +R IP+ D G+ L + GA +NL+D+T TLP+ +TGVSGSGK
Sbjct: 594 GARKIEIPTQR-IPA------DPGKVLKLIGARGNNLKDVTLTLPVGLFTCITGVSGSGK 646
Query: 1632 STLARDVLLASVQGIVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIG 1691
STL D L + QR G + A R + G E D+V+++DQ+PIG
Sbjct: 647 STLINDTLFP-----IAQRQLNGGELNEPAAYRD-------IQGLEHFDKVIDIDQSPIG 694
Query: 1692 KTPRSCPATYIGFWDTIRKLFADTLEAKARGYGPARFSFNTGEGRCPGCEGAGVRTIEMS 1751
+TPRS PATY G + IR+LFA EA++RGY P RFSFN GRC C+G GV +EM
Sbjct: 695 RTPRSNPATYTGVFTPIRELFAGVPEARSRGYNPGRFSFNVRGGRCEACQGDGVIKVEMH 754
Query: 1752 FLPDVKVPCEVCHGARFNPETLAVSWRGKSIGDVLKMEVDEAVEFFASMPNIAHPLQLLK 1811
FLPD+ VPC+ C R+N ETL + ++GKSI +VL+M ++EA EFF ++P +A LQ L
Sbjct: 755 FLPDIYVPCDQCKSKRYNRETLEIKYKGKSIHEVLEMTIEEAREFFDAIPALARKLQTLI 814
Query: 1812 DVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLYVLDEPTVGLHM 1871
DVGL Y+ LGQ + TLSGGEAQR+KL ELSK RG TLY+LDEPT GLH
Sbjct: 815 DVGLSYIRLGQSATTLSGGEAQRVKLARELSK-------RG--TGQTLYILDEPTTGLHF 865
Query: 1872 ADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGRIVAAAPPEEVV 1931
AD+++L+ VLH+L + G+++VVIEH+LD+I ADWI+DLGPEGG+ GG I+ + PE V
Sbjct: 866 ADIQQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVA 925
Query: 1932 RL-GTHTGVALAPVLAR 1947
+ +HT L P+L R
Sbjct: 926 QCEKSHTARFLKPILER 942
Score = 536 bits (1381), Expect = e-156
Identities = 376/1028 (36%), Positives = 541/1028 (52%), Gaps = 120/1028 (11%)
Query: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I IRGAR HNL+N++L I ++ VVTG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 4 IEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDRET 125
FL M+KP VD +EG+ PAI+I+Q + + RSTVGT+TE++D+L+LLFAR + E
Sbjct: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEH 123
Query: 126 ALPVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPASTTAEEVTQWLSASGFTRVQSE 185
A+P+ + + + + RL++ P+ + + L+ G+ R + +
Sbjct: 124 AIPLDAQTVSQMVDNVLSQPEG---KRLMLLAPIVKERKGEHTKTLENLATQGYIRARID 180
Query: 186 REVATPTGPRKV-------LDVVADRFRASSAERSRVVEAIEVALKRGSGRVTVHATGAE 238
EV + P K+ +DVV DRF+ + R+ E+ E AL+ SG V A +
Sbjct: 181 GEVCDLSDPPKLELQKKHTIDVVVDRFKVRNDLAQRLAESFETALEL-SGGTAVVADMDD 239
Query: 239 ENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVIPN 298
NAP + FS CP + P +FSFN+ GAC TC G G D V+ N
Sbjct: 240 PNAPELL--FSANFACPVCGYSMHELEPRLFSFNNPAGACPTCDGLGVQQFFDPARVVQN 297
Query: 299 DKLTLRAGAIKTIQTPAWKEAQ----DDLMRHAETAGIPRDTPWNKLTDEQKHWVIEGTP 354
+L+L GAI+ W L AE + P++ L+ + ++ G+
Sbjct: 298 GELSLAGGAIR-----GWDRRNFYYFQMLRSLAEHYQFDVEAPFDNLSPAVQKVILYGSG 352
Query: 355 ----NYKEGNWNKQWYGVRR--FFAYLES--KAYK----MHIRVLLSKYRSYTQCPTCSG 402
+K N ++ VRR F L + + YK +R L+K+ S C +C+G
Sbjct: 353 KENIEFKYIN-DRGDTSVRRHPFEGVLNNMERRYKETESTAVREELAKFISNRPCASCNG 411
Query: 403 ARLKLDSLIWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLEALPGLCLHDLMLLPIERLR 462
RL +E+A V E+ +P A + A H++ L +
Sbjct: 412 TRL-----------REEARHVY-VEQTTLPQIADMSIGHAMAF----FHNIKL--SGQRA 453
Query: 463 KFFDRMGQGMAPSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALKLLFEEI 522
K +++ + + L L + S AE+ GEAQ ++L +I
Sbjct: 454 KIAEKVLKEIGDRLRFLVNVGLNYLSLSRSAET-----------LSGGEAQRIRLA-SQI 501
Query: 523 TTRLRYLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRD 582
L VG+ Y+ LD S L + +R+ T +L NT+ V++ H D
Sbjct: 502 GAGL-----VGVMYV-LDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVE------HDED 549
Query: 583 MNRITEAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGTTDQ-LRD 641
R AAD +ID+GPG G GGQ++ +GT Q + +
Sbjct: 550 AIR--------------------------AADHIIDIGPGAGVHGGQVIAEGTAAQIMAE 583
Query: 642 ADTLTGQYLGGRKKIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSG 701
++LTGQ+L G +KI + +R+ ++ L L G R +NLK++T+ P+ C+TGVSG
Sbjct: 584 PESLTGQFLSGARKIEIPTQRIPADPGKVLKLIGARGNNLKDVTLTLPVGLFTCITGVSG 643
Query: 702 SGKSTLIQDVLAPALMRHF-GKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSNPAS 760
SGKSTLI D L P R G P A+ + G +H V+ +DQSPIG+T RSNPA+
Sbjct: 644 SGKSTLINDTLFPIAQRQLNGGELNEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPAT 703
Query: 761 YVGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRC 820
Y G + IRE+FA +R RGY +FSFN GRC C G G VEM FL D+Y+ C
Sbjct: 704 YTGVFTPIRELFAGVPEARSRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPC 763
Query: 821 PDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDVGLD 880
C KRY E LE++ KGKS + +VL++T+ EA F+A + R LQ + DVGL
Sbjct: 764 DQCKSKRYNRETLEIKY--KGKS--IHEVLEMTIEEAREFFDAIPALARKLQTLIDVGLS 819
Query: 881 YVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTGLHFDDI 940
Y++LGQ TLSGGEAQR+KLA L++ G TL++ DEPTTGLHF DI
Sbjct: 820 YIRLGQSATTLSGGEAQRVKLARELSKRGTGQ-----------TLYILDEPTTGLHFADI 868
Query: 941 ARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPEQLRENR 1000
+L+ L +L + G++++VIEHNLDVI+ +DW++DLGPEGG GGG+++ GTPE + +
Sbjct: 869 QQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAQCE 928
Query: 1001 ASLTGAAL 1008
S T L
Sbjct: 929 KSHTARFL 936
Score = 156 bits (395), Expect = 1e-41
Identities = 114/348 (32%), Positives = 174/348 (50%), Gaps = 54/348 (15%)
Query: 820 CPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVF-------EADRDVLRVLQ 872
C C+G R R E V VE+ + + D+++ A A F + + +VL+
Sbjct: 406 CASCNGTRLREEARHVYVEQT----TLPQIADMSIGHAMAFFHNIKLSGQRAKIAEKVLK 461
Query: 873 PISD-------VGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTL 925
I D VGL+Y+ L + TLSGGEAQR++LA S+ G +
Sbjct: 462 EIGDRLRFLVNVGLNYLSLSRSAETLSGGEAQRIRLA------------SQIGAGLVGVM 509
Query: 926 FLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGG 985
++ DEP+ GLH D RL+ L L G+++IV+EH+ D IRA+D +ID+GP G GG
Sbjct: 510 YVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHIIDIGPGAGVHGG 569
Query: 986 QVVAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPG--SDAV 1043
QV+AEGT Q+ SLTG L+ AR+ ++ P +
Sbjct: 570 QVIAEGTAAQIMAEPESLTGQFLS----------------GARKIEIPTQRIPADPGKVL 613
Query: 1044 QIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSI 1103
+++ AR +NLK++++ +P G F+ +TGVSGSGKSTL D LF QR+ LN +
Sbjct: 614 KLIGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQ----LN--GGEL 667
Query: 1104 VQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLY 1151
+PA ++ + + I+Q +S T T V+ +R L+
Sbjct: 668 NEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPIRELF 715
Score = 51.6 bits (122), Expect = 5e-10
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 670 RLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQDVLAPALMRHFGKATETPGA 729
++ + G R HNLKNI + P +L+ VTG+SGSGKS+L D L R + E+ A
Sbjct: 3 KIEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRY---VESLSA 59
Query: 730 HDRML-------GADH---LGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFA 773
+ R DH L + ++Q RS + D +R +FA
Sbjct: 60 YARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFA 113