Pairwise Alignments
Query, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Subject, 938 a.a., uvrA paralog in Bacteroidetes (from data) from Echinicola vietnamensis KMM 6221, DSM 17526
Score = 692 bits (1785), Expect = 0.0
Identities = 403/1017 (39%), Positives = 583/1017 (57%), Gaps = 114/1017 (11%)
Query: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I I+ AR +NL+NL + I ++ VVTG SGSGKSSL FDTL+AEGQR YVE+ S+YARQ
Sbjct: 21 IIIKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTLFAEGQRMYVESLSSYARQ 80
Query: 66 FLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDRET 125
FL RM+KP V+ ++GV PAIAI Q ++ RSTVGT TE+ D+LKLLF+R +
Sbjct: 81 FLGRMEKPDVEYIKGVSPAIAIQQKVSTKNPRSTVGTTTEIYDYLKLLFSRIGRTISPVS 140
Query: 126 ALPVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPASTTAEEVTQWLSASGFTRVQSE 185
V+H + + I G+ +++++ P++ AS T ++ + L GFTR+ E
Sbjct: 141 GEEVKHHTVTDVVDFI--HGFEEGE-KVMISCPLQANASRTMQKELEVLLQKGFTRIIIE 197
Query: 186 REV-------ATPTGPRKVLDVVADRFRASSAERS---RVVEAIEVALKRGSGRVTVHAT 235
EV T P ++++ DR + R+ ++++ A G G V
Sbjct: 198 GEVYYVEDLLEEKTIPDGDIEILIDRAVVRKDDEDNHFRIADSVQTAFFEGHGDCFVVIP 257
Query: 236 GAEENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLV 295
G E +D ++ + + P + FSFN+ GAC TC GFG V+G+D LV
Sbjct: 258 GKETRKFSDRFELD--------GLSFELPSVNFFSFNNPYGACKTCEGFGSVLGIDPDLV 309
Query: 296 IPNDKLTLRAGAIKTIQTPAWKEAQDDLMRHAETAGIPRDTPWNKLTDEQKHWVIEGTPN 355
IP+ L++ GAI + K+ L+++ P P+ +L + K + +G
Sbjct: 310 IPDKSLSIYEGAIAPWRGETTKKWAAPLIKNGIHFDFPIHRPYEELDEAHKDLIWKGNSY 369
Query: 356 YKEGNWNKQWYGVRRFFAYLESKAYKMHIRVLLSKYRSYTQCPTCSGARLKLDSLIWRIG 415
+K G+ FF +L+SK +K+ RV+LS++R T CP C G RL+ D+ ++
Sbjct: 370 FK---------GLDAFFEHLQSKTHKIQYRVMLSRFRGRTTCPDCKGTRLRKDAAYVKVN 420
Query: 416 SKEDADAVLPPEKRFMPTGAKWTRAQLEALPGLCLHDLMLLPIERLRKFFDRMGQGMAPS 475
G + D++L+PI+R FF +
Sbjct: 421 -------------------------------GHSITDIVLMPIDRALAFFQNIQ------ 443
Query: 476 LAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALKLLFEEITTRLRYLHDVGIG 535
+ E + L +EI RL Y+ VG+G
Sbjct: 444 -------------------------------LTEAEEKTANRLLKEILNRLEYIDKVGLG 472
Query: 536 YLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMNRITEAMLRLRD 595
YLTL+R + +LSGGE QRI L T+LG++LV ++++LDEPSIGLHPRD +R+ + LRD
Sbjct: 473 YLTLNRLTSSLSGGEYQRIKLATSLGSALVGSMYILDEPSIGLHPRDSDRLISVLKSLRD 532
Query: 596 AGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGTTDQ-LRDADTLTGQYLGGRK 654
GNT++VVEH+ +M AAD ++D+GP G GG++VF G D+ L +T T +YL G +
Sbjct: 533 MGNTVIVVEHEEKIMKAADEIVDIGPEAGVNGGKLVFQGKLDELLAHGETYTAKYLKGEE 592
Query: 655 KIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQDVLAP 714
KI + K+ + ++++ G RE+NLKNI V PL L +TGVSGSGKSTLI+ VL P
Sbjct: 593 KIDI--KQGNRKWKDKILINGARENNLKNINVQIPLNTLTVITGVSGSGKSTLIKKVLYP 650
Query: 715 ALMRHFGKATETPGAHDRMLG-ADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFA 773
AL + G + G D++ G + V FVDQ+PIGK++RSNP +YV A+DAIR +FA
Sbjct: 651 ALGKILGTVIDETGKFDKLEGDYKSISQVEFVDQNPIGKSSRSNPVTYVKAYDAIRSLFA 710
Query: 774 TAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGKRYRPEIL 833
+++QRGY + FSFN GRC C G G + +EMQF++D++L C C GKR++ EIL
Sbjct: 711 DQPVAKQRGYKPAFFSFNVDGGRCEACQGEGTQKIEMQFMADIFLTCESCKGKRFKNEIL 770
Query: 834 EVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDVGLDYVKLGQPVPTLSG 893
++ + K N+ADVL++T+ EA F+ ++ LQP+ +VGL Y+ LGQ TLSG
Sbjct: 771 DITYKDK----NIADVLEMTIDEAMEFFQGKNAIISRLQPLQEVGLGYIGLGQSSNTLSG 826
Query: 894 GEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTGLHFDDIARLMRALRKLLEA 953
GEAQR+KLA FL KG +K V LF+FDEPTTGLHF DI +L+ ++ L+E
Sbjct: 827 GEAQRVKLASFL---GKGGNKAKDHV-----LFIFDEPTTGLHFHDIKKLLYSINALIEE 878
Query: 954 GHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPEQLRENRASLTGAALAD 1010
GHS+I+IEHN +VI+++DW+IDLGPEGGE GG V EGTPE LRE + + T L +
Sbjct: 879 GHSVIIIEHNTEVIKSADWVIDLGPEGGERGGNVTFEGTPEALREVKDNYTAKYLRE 935
Score = 449 bits (1154), Expect = e-129
Identities = 246/557 (44%), Positives = 343/557 (61%), Gaps = 43/557 (7%)
Query: 1376 CPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIAR 1435
CP C+GTRL A V G IT++ M + +F+ + LT E + A
Sbjct: 402 CPDCKGTRLRKDAAYVKVN--------GHSITDIVLMPIDRALAFFQNIQLTEAEEKTAN 453
Query: 1436 DLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTI 1495
L+ EI +RLE++++VGLGYLTL+R +LSGGE QRI+LA LGS L G Y+LDEP+I
Sbjct: 454 RLLKEILNRLEYIDKVGLGYLTLNRLTSSLSGGEYQRIKLATSLGSALVGSMYILDEPSI 513
Query: 1496 GLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEGTV 1555
GLH RD+ L++ L L + GNT++VVEH+E ++ AD I+DIGP AG GG+LV +G +
Sbjct: 514 GLHPRDSDRLISVLKSLRDMGNTVIVVEHEEKIMKAADEIVDIGPEAGVNGGKLVFQGKL 573
Query: 1556 ADIQNAGDSQTGRYLRDAIRHPLQARRSIPSPDPQAEDNGEW---LTVHGADLHNLQDLT 1612
++ G++ T +YL+ + ++ + N +W + ++GA +NL+++
Sbjct: 574 DELLAHGETYTAKYLKGEEKIDIK------------QGNRKWKDKILINGARENNLKNIN 621
Query: 1613 ATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGRDADAAGKRPAWAGCRK 1672
+PL+ L V+TGVSGSGKSTL + VL ++ I+ G D GK G
Sbjct: 622 VQIPLNTLTVITGVSGSGKSTLIKKVLYPALGKIL-------GTVIDETGKFDKLEG--- 671
Query: 1673 VDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKARGYGPARFSFNT 1732
Y++I +V VDQ PIGK+ RS P TY+ +D IR LFAD AK RGY PA FSFN
Sbjct: 672 --DYKSISQVEFVDQNPIGKSSRSNPVTYVKAYDAIRSLFADQPVAKQRGYKPAFFSFNV 729
Query: 1733 GEGRCPGCEGAGVRTIEMSFLPDVKVPCEVCHGARFNPETLAVSWRGKSIGDVLKMEVDE 1792
GRC C+G G + IEM F+ D+ + CE C G RF E L ++++ K+I DVL+M +DE
Sbjct: 730 DGGRCEACQGEGTQKIEMQFMADIFLTCESCKGKRFKNEILDITYKDKNIADVLEMTIDE 789
Query: 1793 AVEFFASMPNIAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRG 1852
A+EFF I LQ L++VGLGY+ LGQ S TLSGGEAQR+KL + L K G
Sbjct: 790 AMEFFQGKNAIISRLQPLQEVGLGYIGLGQSSNTLSGGEAQRVKLASFLGK-------GG 842
Query: 1853 QKA-PHTLYVLDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLG 1911
KA H L++ DEPT GLH D++KL++ ++ L+ GHSV++IEH+ ++I ADW+IDLG
Sbjct: 843 NKAKDHVLFIFDEPTTGLHFHDIKKLLYSINALIEEGHSVIIIEHNTEVIKSADWVIDLG 902
Query: 1912 PEGGNAGGRIVAAAPPE 1928
PEGG GG + PE
Sbjct: 903 PEGGERGGNVTFEGTPE 919
Score = 144 bits (363), Expect = 6e-38
Identities = 94/280 (33%), Positives = 148/280 (52%), Gaps = 46/280 (16%)
Query: 820 CPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVF------EAD--------R 865
CPDC G R R + V+V +++ D++ + + A A F EA+ +
Sbjct: 402 CPDCKGTRLRKDAAYVKVN----GHSITDIVLMPIDRALAFFQNIQLTEAEEKTANRLLK 457
Query: 866 DVLRVLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTL 925
++L L+ I VGL Y+ L + +LSGGE QR+KLA L A G+ +
Sbjct: 458 EILNRLEYIDKVGLGYLTLNRLTSSLSGGEYQRIKLATSLGSALVGS------------M 505
Query: 926 FLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGG 985
++ DEP+ GLH D RL+ L+ L + G+++IV+EH +++A+D ++D+GPE G GG
Sbjct: 506 YILDEPSIGLHPRDSDRLISVLKSLRDMGNTVIVVEHEEKIMKAADEIVDIGPEAGVNGG 565
Query: 986 QVVAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPGSDAVQI 1045
++V +G ++L + + T L E K+ + R D + I
Sbjct: 566 KLVFQGKLDELLAHGETYTAKYLKGEE--------KIDIKQGNR--------KWKDKILI 609
Query: 1046 VNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILF 1085
ARE+NLKN++V IP +V+TGVSGSGKSTL +L+
Sbjct: 610 NGARENNLKNINVQIPLNTLTVITGVSGSGKSTLIKKVLY 649
Score = 140 bits (352), Expect = 1e-36
Identities = 99/320 (30%), Positives = 150/320 (46%), Gaps = 45/320 (14%)
Query: 1045 IVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIV 1104
I NAR +NLKNLSV IPR K VVTG+SGSGKS+LAFD LF EGQR Y+ESL++YAR +
Sbjct: 23 IKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTLFAEGQRMYVESLSSYARQFL 82
Query: 1105 QPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCIHDGA 1164
+P+V+ + G+ P +AI+Q++S +STVGTTTE++ +L+LL+ ++G G
Sbjct: 83 GRMEKPDVEYIKGVSPAIAIQQKVSTKNPRSTVGTTTEIYDYLKLLFSRIGRTISPVSGE 142
Query: 1165 AVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVYTELADWARPRGFTHLRVDGDFLP 1224
V+ T + + +G+ + + PL +N + + +GFT + ++G+
Sbjct: 143 EVKHHTVTDVVDFIHGFEEGEKVMISCPLQANASRTMQKELEVLLQKGFTRIIIEGEVYY 202
Query: 1225 TTGFPRIDRFKEHSIELPVASLDVLPSKET---ELREALTKALEHGKGVVHVL------- 1274
+ IE+ + V E + +++ A G G V+
Sbjct: 203 VEDLLEEKTIPDGDIEILIDRAVVRKDDEDNHFRIADSVQTAFFEGHGDCFVVIPGKETR 262
Query: 1275 -----SELDGLRAAMMAGVSAAGIGRVHVFSTLRACPVCSTSYAELDPRLFSYNSKHGWC 1329
ELDGL S+ FS+N+ +G C
Sbjct: 263 KFSDRFELDGL------------------------------SFELPSVNFFSFNNPYGAC 292
Query: 1330 PDCVGTGVKLSKDQRKVFDD 1349
C G G L D V D
Sbjct: 293 KTCEGFGSVLGIDPDLVIPD 312
Score = 131 bits (329), Expect = 5e-34
Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 54/263 (20%)
Query: 1317 PRLFSYNSKHGWCPDCVGTGVKLSKDQRKVFDDSVRDDDNKGREQTFAEPEVEDLADV-- 1374
P FS+N G C C G G + + E++ +AD+
Sbjct: 722 PAFFSFNVDGGRCEACQGEGTQ--------------------------KIEMQFMADIFL 755
Query: 1375 ACPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIA 1434
C +C+G R +++ I ++ M++ E ++F+G
Sbjct: 756 TCESCKGKRFKNEILDITYKDK--------NIADVLEMTIDEAMEFFQGKNA-------- 799
Query: 1435 RDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSN----LQGVCYVL 1490
I SRL+ L+EVGLGY+ L + + TLSGGEAQR++LA+ LG V ++
Sbjct: 800 ------IISRLQPLQEVGLGYIGLGQSSNTLSGGEAQRVKLASFLGKGGNKAKDHVLFIF 853
Query: 1491 DEPTIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLV 1550
DEPT GLH D + LL +++ L E+G++++++EH+ + I+ AD +ID+GP G+RGG +
Sbjct: 854 DEPTTGLHFHDIKKLLYSINALIEEGHSVIIIEHNTEVIKSADWVIDLGPEGGERGGNVT 913
Query: 1551 AEGTVADIQNAGDSQTGRYLRDA 1573
EGT ++ D+ T +YLR++
Sbjct: 914 FEGTPEALREVKDNYTAKYLRES 936
Score = 120 bits (301), Expect = 9e-31
Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 24/192 (12%)
Query: 1757 KVPCEVCHGARFNPETLAVSWRGKSIGDVLKMEVDEAVEFFAS--------------MPN 1802
+ C C G R + V G SI D++ M +D A+ FF + +
Sbjct: 399 RTTCPDCKGTRLRKDAAYVKVNGHSITDIVLMPIDRALAFFQNIQLTEAEEKTANRLLKE 458
Query: 1803 IAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLYVL 1862
I + L+ + VGLGYLTL + + +LSGGE QRIKL T L G ++Y+L
Sbjct: 459 ILNRLEYIDKVGLGYLTLNRLTSSLSGGEYQRIKLATSL----------GSALVGSMYIL 508
Query: 1863 DEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGRIV 1922
DEP++GLH D ++LI VL L + G++V+V+EH+ ++ AD I+D+GPE G GG++V
Sbjct: 509 DEPSIGLHPRDSDRLISVLKSLRDMGNTVIVVEHEEKIMKAADEIVDIGPEAGVNGGKLV 568
Query: 1923 AAAPPEEVVRLG 1934
+E++ G
Sbjct: 569 FQGKLDELLAHG 580
Score = 62.8 bits (151), Expect = 2e-13
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 1583 SIPSPDPQAEDNGEWLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLAS 1642
SI + DP++ ++ + A ++NL++L+ +P ++LVVVTG+SGSGKS+LA D L A
Sbjct: 11 SIENLDPKS-----YIIIKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTLFAE 65
Query: 1643 VQGIVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYI 1702
Q + V+ ++ R ++P V+ + + + + Q K PRS T
Sbjct: 66 GQRMYVESLSSYARQFLGRMEKP------DVEYIKGVSPAIAIQQKVSTKNPRSTVGTTT 119
Query: 1703 GFWDTIRKLFA 1713
+D ++ LF+
Sbjct: 120 EIYDYLKLLFS 130