Pairwise Alignments

Query, 370 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 409 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score = 67.4 bits (163), Expect = 7e-16
 Identities = 77/343 (22%), Positives = 142/343 (41%), Gaps = 16/343 (4%)

Query: 5   RMLCAAALLAFSAVGASAQ-LLIGQTAGMTGSVAASVNETIGGAQLVIDAVNAQGGLYGE 63
           ++L   + LAFS    +A  + IG     TG  ++       G +L  + +N  GG+ G 
Sbjct: 6   KLLALTSALAFSMGALAADPIKIGVDGPFTGGSSSMGVSMRDGVRLAAEEINKSGGVLGR 65

Query: 64  KIEVLRMDDGFDVKRASDNARTLIEDKKVLAL--FMSRGTPHSQAIIPWLDKYDVALVGP 121
           +I+++  DD    +R    A+  +  +KV+A   +++ G   +     + D     L   
Sbjct: 66  QIQLIERDDEAKNERGVQIAQEFVNKEKVVAAVGYINTGVALASQRF-FQDAKIPVLNNV 124

Query: 122 STGAMVLH---KPLQKHVFNVRATYQREAEKAVQHLLT-IGLTRIAVVYVTDSFGQDALE 177
           +TG+++ H   K  + +VF   A    +A   V+  +T  G  ++A++  + ++GQ   E
Sbjct: 125 ATGSVITHQFDKDPENYVFRNAAHDSIQAPMIVEEAITRRGYKKVAILADSTNYGQLGRE 184

Query: 178 GAMTGFTKGKAKPTATIPADRDKPDYKVIVPAIKEANAQAVVWIGSGVAVVDGIKALRAA 237
                       P A    +    D    +   KEA A+AV+  G G  +      +   
Sbjct: 185 DLERALKNKGITPVAVEKFNIKDVDMTAQLLKSKEAGAEAVLTYGIGPELAQIANGMTKL 244

Query: 238 GSAAQVVTLSNNASSGFIKQLGDASKGVIVTQVFPNERSLGQPMVKEALTLAQAK----- 292
           G    ++     A + FI   G    G  + Q F  E +   P  K  +     K     
Sbjct: 245 GWKVPIIGSWTLAMANFIDNAGPGGDGARMPQTFIQEPT--NPKRKAFIDAFVGKFKPKN 302

Query: 293 GQSELSPAALEGFASAKVLVEALRRAGPKPTRAKVIAALESIK 335
            + +   +A +G+ S  +L  A+++AG      K+ AALE ++
Sbjct: 303 NRMDSPVSAAQGYDSIYLLAAAIKQAG-STDGPKIKAALEDLQ 344