Pairwise Alignments

Query, 370 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 381 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  152 bits (385), Expect = 1e-41
 Identities = 107/360 (29%), Positives = 179/360 (49%), Gaps = 9/360 (2%)

Query: 15  ATGAPAVSAQILIGQSADLSGPVAASVKETIMGSQLVIDAVNAQGGINGEQIEVIRMDDG 74
           A  +     +I++G +  LSGP+ A +K  + G+ L  DAVNAQGG++G +I ++ +DD 
Sbjct: 27  AAESGVTDTEIVLGHTGILSGPLGAPIKVVVAGAGLAFDAVNAQGGLSGRKIRLVSLDDE 86

Query: 75  LDAKRSLENTRVLIEDKKVVALLLNRGTPNTLAVIPLLDKYGVALVGPSTGAMALHKPLQ 134
           L  ++++ N   L+ +    A     G+  T A   +L++ G  +VG    + +  + + 
Sbjct: 87  LVPEKAVANYEKLLGEHHAFAFFGCVGSGTTAAAAKVLNQSGAPMVGGYAVSDSAREKVA 146

Query: 135 KNIFNVRSTYQREAEKAVQHLQTTGIQRIAVVQADDSFGKDAMEGANKGFEKAGLKPVVV 194
            + + VR+T+ REA+  VQHL T G+ RIAV   D+  G +  +          LKPV  
Sbjct: 147 GSGYFVRATFAREAQALVQHLTTIGVSRIAVAYLDNPGGAEVAKLVEAALSTLQLKPVAA 206

Query: 195 ALADRNKPDYGAIVPQLTKSNAQAVLWIGSGTAVTDGIKALRAAGSAAQIITLSNNAASG 254
                +     A    L  S AQAV+    G    + +K+  AAG       +S      
Sbjct: 207 VPVKGDGSANEASGKALADSKAQAVIMYLGGGIGGEVMKSAWAAGGRQMFYGMSIVPGDV 266

Query: 255 FIKELGSASAGVIITQVLPY---ERAMGHPLIKEAATLAKAKGQNELSPALLEGFVATKV 311
             K +G  ++G+ I+Q++PY   E   G    ++ A  AK     ++     EG+V   V
Sbjct: 267 TAKLVGDKTSGLAISQIVPYPWSEVDAGAREYRQQAERAKV----DVGYLSYEGYVNALV 322

Query: 312 MVEALRRTGPKPTRAKLIATLNNFQYDLGPGLDISYSPTDHTGIEYVDL-SIVSDGRFKR 370
           M+EALRRTG   TRAKL ATL   +  +   ++I ++   +TG  ++++  +  +G+F R
Sbjct: 323 MIEALRRTGRDLTRAKLHATLKAMKLRVN-NMEIDFTGASNTGSRFIEMVRVTKEGKFLR 381