Pairwise Alignments

Query, 370 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 404 a.a., hypothetical protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 88.2 bits (217), Expect = 4e-22
 Identities = 95/366 (25%), Positives = 162/366 (44%), Gaps = 24/366 (6%)

Query: 10  VAFLLATGAPAVS-AQILIGQSADLSGPVAASVKETIMGSQLV-IDAVNAQGGINGEQIE 67
           +AF     AP ++  +I  GQ+  LSGP  AS   TI   Q      +N QGG+NG ++ 
Sbjct: 22  LAFAQKKYAPGITDTEIKFGQTGPLSGP--ASAYGTIGRVQTAYFKMLNEQGGVNGRKLN 79

Query: 68  VIRMDDGLDAKRSLENTRVLIEDKKVVALLLNRGTPNTLAVIPLLDKYGVALVGPSTGAM 127
           ++  DDG    +++E  R L+E  +V  +    GT   +AV   L++  +  +  + GA 
Sbjct: 80  LVVQDDGYSPPKTVEQVRRLVERDEVAFIFNILGTAPNVAVRKYLNERKIPQLFTAAGAS 139

Query: 128 AL--HKPLQKNIFNVRSTYQREAEKAVQHLQTTGIQ-RIAVVQADDSFGKDAMEGANKGF 184
               HK     I  ++ +YQ EA+  V++L+ T    +IA++  +D  GKD +EG     
Sbjct: 140 TFGDHKNWPWTIV-LQPSYQAEAKIYVEYLKKTKPDAKIALLTGNDDAGKDYVEGVKHAL 198

Query: 185 EKAGLKPVVVALA--DRNKPDYGAIVPQLTKSNAQAVLWIGSGTAVTDGIKALRAAG-SA 241
              G+K  +VA A  +   P+  + V  L  S A  ++  G     +  I+ +   G   
Sbjct: 199 GPDGVKKHIVAEATFESTDPNTDSQVLALRGSGADTLIVHGVSKWASMTIRKVYDIGWKP 258

Query: 242 AQIITLSNNAASGFIKELGSASAGVIITQVLPYERAMGHPLIKE-------AATLAKAKG 294
             I+T +  + SG ++  G   A  +IT    Y +    P            A + K   
Sbjct: 259 TFILTATATSVSGVLEPAGLEKATGLITSY--YLKDPNDPQWANDKGFQDWLAFMKKYYP 316

Query: 295 QNELSPAL-LEGFVATKVMVEALRRTGPKPTRAKLIATLNNFQYDLG---PGLDISYSPT 350
                  L + G+   + +V+ L++ G   +R  ++    N   +L    PG+ I   P 
Sbjct: 317 AGSTGDQLNVYGYTMAQALVQTLKQCGEDLSRENIMKQAANLDVELPMLLPGIKIKTGPN 376

Query: 351 DHTGIE 356
           D+ G+E
Sbjct: 377 DYFGVE 382