Pairwise Alignments

Query, 370 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 372 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

 Score = 67.0 bits (162), Expect = 8e-16
 Identities = 61/280 (21%), Positives = 116/280 (41%), Gaps = 29/280 (10%)

Query: 1   MKKTFTSCAVAFLLATGAPAVSAQILIGQSADLSGPVAASVKETIMGSQLVIDAVNAQGG 60
           MKK+  S      +     +  A ++I   A L+GP AA   +   G++     +NA GG
Sbjct: 1   MKKSLLSAVALTAMVAFGGSAWADVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGG 60

Query: 61  INGEQIEVIRMDDGLDAKRSLENTRVLIED--KKVVALLLNRGTPNTLAVIPLLDKYGVA 118
           INGEQI+++  DD  D K+ +      + D  K VV      G  N+   IP  + Y   
Sbjct: 61  INGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVV------GHFNSGVSIPASEVYAEN 114

Query: 119 LVGPSTGAMALHKPLQKNIFNVRSTYQREAEKA-------VQHLQTTGIQRIAVVQADDS 171
            +   T A       ++ ++N   T  R+ ++          H +     ++A++     
Sbjct: 115 GILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDA---KVAIIHDKTP 171

Query: 172 FGKDAMEGANKGFEKAGLKPVVVALADRNKPDYGAIVPQLTKSNAQAVLWIGSGT----- 226
           +G+   +   K    AG+  V+    +    D+ A++ ++ ++    + W G  T     
Sbjct: 172 YGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLI 231

Query: 227 ---AVTDGIKALRAAGS---AAQIITLSNNAASGFIKELG 260
              A   G+KA   +G    + ++ +++ +A  G +   G
Sbjct: 232 IRQAADQGLKAKLVSGDGIVSNELASIAGDAVEGTLNTFG 271