Pairwise Alignments

Query, 370 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 368 a.a., ABC transporter, substrate binding protein (branched chain amino acid) from Agrobacterium fabrum C58

 Score = 86.7 bits (213), Expect = 9e-22
 Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 13/322 (4%)

Query: 3   KTFTSCAVAFLLATGAPAVSAQILIGQSADLSGPVAASVKETIMGSQLVIDAVNAQGGIN 62
           KT TS  +A   A  AP   A+I+IG  A L+GPVAA   +   G+Q  +  +N +GGI 
Sbjct: 4   KTLTSVTLAASFAF-APLAHAEIVIGLIAPLTGPVAAYGDQVKNGAQTAVSEINKKGGIL 62

Query: 63  GEQIEVIRMDDGLDAKRSLENTRVLIEDKKVVALLLNRGTPNTLAVIPLLDKY---GVAL 119
           GEQ+ +   DDG + K+ +     L+ +     +    G   +   IP  D +   GV +
Sbjct: 63  GEQVVLKLADDGGEPKQGVSAANQLVAE----GIHFVVGPVTSGVAIPASDVFAENGVLM 118

Query: 120 VGPSTGAMALHKPLQKNIFNVRSTYQREAEKAVQH-LQTTGIQRIAVVQADDSFGKDAME 178
           V P+  A  L      N+F       ++AE A ++ L     ++IA++    ++GK   +
Sbjct: 119 VTPTATAPGLTNRGLSNVFRTCGRDDQQAEVAAKYVLANLKGKKIAIIHDKGAYGKGLAD 178

Query: 179 GANKGFEKAGLKPVVVALADRNKPDYGAIVPQLTKSNAQAVLWIGSGTAVTDGIKALRAA 238
                    G+  V+       + D GA+  +L   NA  V + G        ++ L+  
Sbjct: 179 SFKATLNAGGVTEVLYDALTPGEKDLGALTARLKSDNADIVYFGGYHPEAGLLVRQLKDI 238

Query: 239 GSAAQIITLSNNAASGFIKELGSASAGVIITQVLPYERAMGHPLIKEAATLAKAKGQNEL 298
           GS A +I     + S F      A  G I T       A+ +   K AA   KA      
Sbjct: 239 GSKAAVIGGDGLSNSEFWNIGAKAGEGTIFTNA---SDALKNDDSKAAAEALKA-ANIPA 294

Query: 299 SPALLEGFVATKVMVEALRRTG 320
               L  + A +V+   + + G
Sbjct: 295 EAFTLNAYAAVEVLKAGIEKAG 316