Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 774 a.a., transcription accessory protein from Pseudomonas simiae WCS417

 Score =  849 bits (2193), Expect = 0.0
 Identities = 460/795 (57%), Positives = 561/795 (70%), Gaps = 26/795 (3%)

Query: 1   MQKIIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSY 60
           M  I  ++A E+ V   QV+AAV LLD G+TVPFIARYRKE T  LDDTQLR LE RL Y
Sbjct: 1   MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY 60

Query: 61  LRELEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFG 120
           LREL++RR+++L +I+EQGKLTP+L   I+ A TK  LED+YLP+KQKRRTKGQIA E G
Sbjct: 61  LRELDERRISILASIEEQGKLTPQLERDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 120

Query: 121 IEPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAED 180
           +  LAD L  DP+L P  EA  F+     + D         V   L+G + IL ER+AED
Sbjct: 121 LGDLADGLFNDPSLTPETEAARFIDAEKGVAD---------VKAALEGAKYILMERFAED 171

Query: 181 AALVQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGR 240
           A+L++ LR +L  E +L + +++GK+E  A   KFRDYFE+DEP+  +PSHRALA+FRGR
Sbjct: 172 ASLLEKLRNYLKQEAILSARVIAGKEEEGA---KFRDYFEHDEPLKSMPSHRALAIFRGR 228

Query: 241 ALDILDAKLVLPVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALST 300
              IL + L +  E  PG     EG I    G  +  RPAD  L + V WTW+VKL    
Sbjct: 229 NEGILSSALKVGDEL-PGTMHPCEGMIGQQFGIQNQNRPADKWLGEVVRWTWKVKLYTHL 287

Query: 301 ERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKL 360
           E DL   LR+ AE  AI VFA NL DLLLAAPAGPR  +GLDPG+RTG KVAVVDSTGKL
Sbjct: 288 ETDLLGELRDGAETEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKL 347

Query: 361 VETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMA 420
           ++ ATV+PH P   W+ +L  L  LCAKH V+LIAIGNGTASRETDKLAA+LIK      
Sbjct: 348 LDHATVYPHVPHNKWDQTLAILAALCAKHAVDLIAIGNGTASRETDKLAAELIKKY---- 403

Query: 421 AQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKI 480
                P +++ KV+VSEAGASVYSASE AS+E PD+DVS+RGA SIARRLQDPLAELVKI
Sbjct: 404 -----PAMKMTKVMVSEAGASVYSASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKI 458

Query: 481 DPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAV 540
           DPKSIGVGQYQHDV+Q +LAR L AVVEDCVN+VGVD+NTASV LL+R+SGL+A++A+ +
Sbjct: 459 DPKSIGVGQYQHDVSQLKLARGLDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNI 518

Query: 541 VRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQII 600
           V  R+ NGAF TR  L  V   G K FEQ+AGFLR+  G +PLD + VHPE YPLV++I 
Sbjct: 519 VNHRDENGAFKTRAALKKVARLGEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIA 578

Query: 601 VKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFND 660
            +T + I  L+G A  LK L P+ + +E FGV T+ DIL ELEKPGRDPRP+FK A F D
Sbjct: 579 AETDRDIRSLIGDAAFLKRLDPKKYTDETFGVPTITDILQELEKPGRDPRPEFKTAEFQD 638

Query: 661 GVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDI 720
           GV+D+ DL+ GMILEG V+NV  FGAFVD+GVHQDGLVH+S LS KF+ D RE VK GD+
Sbjct: 639 GVEDLKDLELGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDV 698

Query: 721 VKVKVMEVDVARKRIGLSMKLDAAPARR-DGPRDNRFEGAGRGQQQQGRRDNSPQPA--- 776
           VKVKVMEVD+ RKR+GLSM++   P  + DG R  R   A R  Q    R  +   A   
Sbjct: 699 VKVKVMEVDIPRKRVGLSMRMSDTPGEKIDGARGARPGSAPRQSQNNAPRKETATAAPSN 758

Query: 777 GQMASAFAKLQGLRK 791
             MAS FA  + L+K
Sbjct: 759 NAMASLFANAKQLKK 773