Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 561 a.a., 30S ribosomal protein S1 from Pseudomonas simiae WCS417

 Score = 62.8 bits (151), Expect = 5e-14
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           +  L+EG  ++G V N+  +GAFVDLG   DGL+H++ ++ K +    E+V  GD + VK
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEIVNVGDEIDVK 246

Query: 725 VMEVDVARKRIGLSMK 740
           V++ D  R R+ L +K
Sbjct: 247 VLKYDRERNRVSLGLK 262



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 654 KVARFNDGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFV-NDAR 712
           K  + N   D      +G  + GT+ ++  FG F+ L    DGLVH+S +S   V  +A 
Sbjct: 349 KQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAV 408

Query: 713 EVVKTGDIVKVKVMEVDVARKRIGLSMK 740
              K GD +   ++ VD  R+RI L +K
Sbjct: 409 RRFKKGDELDTVILSVDPERERISLGIK 436



 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 25/65 (38%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 678 VSNVAQFGAFVDLGVHQDGLVHVSQL--SHKFVNDAREVVKTGDIVKVKVMEVDVARKRI 735
           V+N+  +G F +L    +GLVHVS++  ++K ++ ++ VV+ GD V+V V+++D  R+RI
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSK-VVQVGDEVEVMVLDIDEERRRI 344

Query: 736 GLSMK 740
            L +K
Sbjct: 345 SLGIK 349



 Score = 45.4 bits (106), Expect = 8e-09
 Identities = 26/71 (36%), Positives = 40/71 (56%)

Query: 670 EGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVD 729
           +G I++GTV  V   GA + L    +  +  S++S   V DAR V+K G  V+ K++ VD
Sbjct: 452 KGAIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVD 511

Query: 730 VARKRIGLSMK 740
              + I LS+K
Sbjct: 512 RKSRVIQLSIK 522