Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 562 a.a., 30S ribosomal protein S1 from Variovorax sp. OAS795

 Score = 62.8 bits (151), Expect = 5e-14
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 668 LKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVME 727
           LKEG ++ G V N+ ++GAFVDLG   DGL+H++ ++ + V    EVV+ G  +  K+++
Sbjct: 189 LKEGAVVRGVVKNITEYGAFVDLG-GIDGLLHITDMAWRRVRHPSEVVQAGQEITAKILK 247

Query: 728 VDVARKRIGLSMK 740
            D  + R+ L +K
Sbjct: 248 FDTEKNRVSLGLK 260



 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 674 LEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDA-REVVKTGDIVKVKVMEVDVAR 732
           L G V+N+A +GAFV+L    +GLVHVS++     N A  ++V  GD V+V V+E+D  +
Sbjct: 280 LFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPNKIVSLGDEVEVMVLEIDEDK 339

Query: 733 KRIGLSMK 740
           +RI L MK
Sbjct: 340 RRISLGMK 347



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 641 ELEKPGRDPRPDFKVARFNDGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHV 700
           E+++  R      K  + N   +   + K G  ++G + ++  FG FV L    DGLVH+
Sbjct: 334 EIDEDKRRISLGMKQCKANPWQEFAQNTKRGDRVKGPIKSITDFGVFVGLAAGIDGLVHL 393

Query: 701 SQLSHKFVNDAREVV----KTGDIVKVKVMEVDVARKRIGLSMK-LDAAP 745
           S LS    N+A E      K G  V+  V+ VDV R+RI L +K LD+ P
Sbjct: 394 SDLSW---NEAGETAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDSDP 440



 Score = 49.3 bits (116), Expect = 6e-10
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 670 EGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVD 729
           +G I+ G V  V   GA +DLG    G +  S++S   V DAR V+K GD V   V+ VD
Sbjct: 450 KGQIVTGKVKTVDARGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEGDEVTAIVVNVD 509

Query: 730 VARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGQQQQGRRDNS 772
              + I LS+K      ++D   +   +GA     QQ  R+N+
Sbjct: 510 RKTRNIQLSIK------QKDMVDE---QGAMANLSQQSARENA 543