Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 570 a.a., SSU ribosomal protein S1p from Sphingobium sp. HT1-2

 Score = 71.6 bits (174), Expect = 1e-16
 Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           I  L EG I+EG V N+  +GAFVDLG   DGL+HV+ LS+K +N   E++  GD V+V+
Sbjct: 194 IQTLAEGQIIEGVVKNITDYGAFVDLG-GIDGLLHVTDLSYKRINHPNEMINIGDTVRVQ 252

Query: 725 VMEVDVARKRIGLSMK 740
           ++ ++   +RI L MK
Sbjct: 253 IIRINRETQRISLGMK 268



 Score = 53.5 bits (127), Expect = 3e-11
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 671 GMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVN-DAREVVKTGDIVKVKVMEVD 729
           G  L G V+N+ ++GAFV+L    +GLVHVS++S    N    ++V T   V+V V+EVD
Sbjct: 285 GAKLSGRVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVIVLEVD 344

Query: 730 VARKRIGLSMK 740
             ++RI L +K
Sbjct: 345 PEKRRISLGLK 355



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 671 GMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFV-NDAREVVKTGDIVKVKVMEVD 729
           G  +EG V N  +FG F+ L    DG+VH+S ++      DA  + + G+ V+  V+++D
Sbjct: 372 GSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWGISGEDALALHRKGETVQAVVLDID 431

Query: 730 VARKRIGLSMKLDAAPARRDGPRDNRFEGAGRG 762
           V ++RI L MK       R GP       A  G
Sbjct: 432 VEKERISLGMK----QLERGGPAAGGTTAAAAG 460



 Score = 33.1 bits (74), Expect = 4e-05
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 650 RPDFKVARFNDGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVN 709
           R DF  A  ND +       EG +++GTV+ +    A +D+G+  +G V + + +     
Sbjct: 9   RDDF-AALLNDSLGGEDGGFEGRVVKGTVTGIENDMALIDVGLKSEGRVPLREFA---AP 64

Query: 710 DAREVVKTGDIVKVKVMEVDVARKRIGLS 738
             +  +K GD V+V V  V+ A     LS
Sbjct: 65  GQKADLKVGDEVEVYVDRVENAHGEAMLS 93