Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 576 a.a., 30S ribosomal protein S1 from Pseudomonas putida KT2440

 Score = 61.2 bits (147), Expect = 1e-13
 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 668 LKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVME 727
           L+EG  ++G V N+  +GAFVDLG   DGL+H++ ++ K +    E+V  GD V V+V++
Sbjct: 207 LQEGQQVKGIVKNLTDYGAFVDLG-GIDGLLHITDMAWKRIKHPSEIVNVGDEVDVRVLK 265

Query: 728 VDVARKRIGLSMK 740
            D  R R+ L +K
Sbjct: 266 FDRERNRVSLGLK 278



 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 670 EGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQL--SHKFVNDAREVVKTGDIVKVKVME 727
           EG  ++  V+N+  +G F +L    +GLVHVS++  ++K ++ ++ VV+ GD V+V V++
Sbjct: 294 EGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSK-VVQVGDEVEVMVLD 352

Query: 728 VDVARKRIGLSMK 740
           +D  R+RI L +K
Sbjct: 353 IDEERRRISLGIK 365



 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 654 KVARFNDGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLS-HKFVNDAR 712
           K  + N   D      +G  + GT+ ++  FG F+ L    DGLVH+S +S ++   +A 
Sbjct: 365 KQCKSNPWEDFSGQFNKGDKITGTIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAV 424

Query: 713 EVVKTGDIVKVKVMEVDVARKRIGLSMK 740
              K GD ++  ++ VD  R+RI L +K
Sbjct: 425 RRFKKGDELETVILSVDPERERISLGIK 452