Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 627 a.a., 30S ribosomal protein S1 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 7/86 (8%)

Query: 667 DLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVM 726
           +L++G +LEG + N+  FG F+DLG   DGL+H++ +S   +N   EV++    V + V+
Sbjct: 208 NLEKGQVLEGVIKNMTNFGVFIDLG-GVDGLLHITDISWGRINHPEEVLQLDQKVNIVVL 266

Query: 727 EVDVARKRIGLSMK------LDAAPA 746
           + D  +KRI L MK       DA PA
Sbjct: 267 DFDEDKKRISLGMKQLTPHPWDALPA 292



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 676 GTVSNVAQFGAFVDLGVHQDGLVHVSQLS-HKFVNDAREVVKTGDIVKVKVMEVDVARKR 734
           G V N+  FG F++L    DGLVHVS LS  K +    E VK G+ + V V+E+DV  +R
Sbjct: 391 GIVRNLTNFGLFLELEEGVDGLVHVSDLSWTKKIKHPSEFVKVGENLDVVVLELDVPNRR 450

Query: 735 IGLSMK 740
           + L  K
Sbjct: 451 LALGHK 456



 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 24/76 (31%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 666 ADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLS-HKFVNDAREVVKTGDIVKVK 724
           A+++ G  ++G + NVA +GAF++L    +GL+HVS++S  + + + ++ +K GD V+  
Sbjct: 292 AEIEVGSRVKGKIVNVADYGAFLELMPGVEGLIHVSEMSWSQHLRNPQDFIKQGDEVEAV 351

Query: 725 VMEVDVARKRIGLSMK 740
           V+ +D   +++ L +K
Sbjct: 352 VLTLDRQERKMSLGIK 367



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 663 DDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVK 722
           D +  ++E  ++ GTV  V      +++G   DGLV +S+       D  + +K GD V+
Sbjct: 36  DTLTTVQEQEVVTGTVVGVTDRDVILNIGFKSDGLVSISEF-----RDMPD-LKPGDQVE 89

Query: 723 VKVMEVDVARKRIGLSMK 740
           V + + +    ++ LS K
Sbjct: 90  VFIEDQEDPNGQLILSRK 107